Analysis of interatomic Contacts of Structural Units in PDB entry:
7NDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NDH entry

There are 2 chains in PDB entry 7NDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 260VAL 428
B
 GLY 262PRO 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7NDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
272 280Right-handed alpha
Helix 2
AA2
A
287 300Right-handed alpha
Helix 3
AA3
A
312 315Right-handed 310
Helix 4
AA4
A
318 321Right-handed 310
Helix 5
AA5
A
326 335Right-handed alpha
Helix 6
AA6
A
354 366Right-handed alpha
Helix 7
AA7
A
376 383Right-handed alpha
Helix 8
AA8
A
383 393Right-handed alpha
Helix 9
AA9
A
417 422Right-handed alpha
Helix 10
AB1
B
272 279Right-handed alpha
Helix 11
AB2
B
287 300Right-handed alpha
Helix 12
AB3
B
312 315Right-handed 310
Helix 13
AB4
B
326 335Right-handed alpha
Helix 14
AB5
B
354 366Right-handed alpha
Helix 15
AB6
B
376 383Right-handed alpha
Helix 16
AB7
B
383 393Right-handed alpha
Helix 17
AB8
B
417 422Right-handed alpha
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There are 8 sheets in PDB entry 7NDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 341first strand
Strand 2
A
305 310parallel
Strand 3
A
268 271parallel
Strand 4
A
369 371parallel
Strand 5
A
394 395parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
323 324parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 346first strand
Strand 2
A
349 352anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
403 405anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 341first strand
Strand 2
B
305 310parallel
Strand 3
B
268 271parallel
Strand 4
B
369 371parallel
Strand 5
B
394 395parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 286first strand
Strand 2
B
323 324parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 346first strand
Strand 2
B
349 352anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
398 400first strand
Strand 2
B
403 405anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il