Analysis of interatomic Contacts of Structural Units in PDB entry:
7NDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NDL entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 7NDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2ASP 242
A
 THR 244ILE 651
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 7NDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
30 34Right-handed 310
Helix 3
AA3
A
49 53Right-handed 310
Helix 4
AA4
A
65 75Right-handed alpha
Helix 5
AA5
A
128 139Right-handed alpha
Helix 6
AA6
A
149 162Right-handed alpha
Helix 7
AA7
A
169 179Right-handed alpha
Helix 8
AA8
A
262 266Right-handed 310
Helix 9
AA9
A
312 317Right-handed 310
Helix 10
AB1
A
323 331Right-handed alpha
Helix 11
AB2
A
331 341Right-handed alpha
Helix 12
AB3
A
353 357Right-handed 310
Helix 13
AB4
A
359 366Right-handed alpha
Helix 14
AB5
A
374 393Right-handed alpha
Helix 15
AB6
A
401 407Right-handed alpha
Helix 16
AB7
A
426 439Right-handed alpha
Helix 17
AB8
A
452 458Right-handed alpha
Helix 18
AB9
A
475 493Right-handed alpha
Helix 19
AC1
A
496 498Right-handed 310
Helix 20
AC2
A
499 522Right-handed alpha
Helix 21
AC3
A
523 535Right-handed alpha
Helix 22
AC4
A
545 547Right-handed 310
Helix 23
AC5
A
548 564Right-handed alpha
Helix 24
AC6
A
573 583Right-handed 310
Helix 25
AC7
A
598 611Right-handed alpha
Helix 26
AC8
A
624 631Right-handed alpha
Helix 27
AC9
A
641 643Right-handed 310
Helix 28
AD1
A
644 664Right-handed alpha
Helix 29
AD2
B
16 31Right-handed alpha
Helix 30
AD3
B
32 34Right-handed 310
Helix 31
AD4
B
49 54Right-handed 310
Helix 32
AD5
B
65 74Right-handed alpha
Helix 33
AD6
B
128 139Right-handed alpha
Helix 34
AD7
B
149 161Right-handed alpha
Helix 35
AD8
B
169 179Right-handed alpha
Helix 36
AD9
B
262 266Right-handed 310
Helix 37
AE1
B
312 317Right-handed 310
Helix 38
AE2
B
323 331Right-handed alpha
Helix 39
AE3
B
331 341Right-handed alpha
Helix 40
AE4
B
353 357Right-handed 310
Helix 41
AE5
B
359 365Right-handed alpha
Helix 42
AE6
B
374 393Right-handed alpha
Helix 43
AE7
B
401 407Right-handed alpha
Helix 44
AE8
B
426 439Right-handed alpha
Helix 45
AE9
B
452 458Right-handed alpha
Helix 46
AF1
B
475 493Right-handed alpha
Helix 47
AF2
B
496 498Right-handed 310
Helix 48
AF3
B
499 522Right-handed alpha
Helix 49
AF4
B
523 533Right-handed alpha
Helix 50
AF5
B
545 547Right-handed 310
Helix 51
AF6
B
548 564Right-handed alpha
Helix 52
AF7
B
573 583Right-handed 310
Helix 53
AF8
B
598 612Right-handed alpha
Helix 54
AF9
B
624 631Right-handed alpha
Helix 55
AG1
B
644 664Right-handed alpha
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There are 10 sheets in PDB entry 7NDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
37 43anti-parallel
Strand 3
A
84 95anti-parallel
Strand 4
A
3 15anti-parallel
Strand 5
A
255 260anti-parallel
Strand 6
A
208 212anti-parallel
Strand 7
A
272 275anti-parallel
Strand 8
A
307 308anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
118 126anti-parallel
Strand 3
A
183 191anti-parallel
Strand 4
A
198 202anti-parallel
Strand 5
A
281 285anti-parallel
Strand 6
A
288 293anti-parallel
Strand 7
A
221 226parallel
Strand 8
A
303 305anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
350 351anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 400first strand
Strand 2
A
368 373parallel
Strand 3
A
415 421parallel
Strand 4
A
442 447parallel
Strand 5
A
460 463parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
566 571first strand
Strand 2
A
539 544parallel
Strand 3
A
589 593parallel
Strand 4
A
617 621parallel
Strand 5
A
634 637parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 63first strand
Strand 2
B
37 43anti-parallel
Strand 3
B
84 95anti-parallel
Strand 4
B
3 15anti-parallel
Strand 5
B
255 260anti-parallel
Strand 6
B
208 212anti-parallel
Strand 7
B
272 275anti-parallel
Strand 8
B
307 308anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
118 126anti-parallel
Strand 3
B
183 191anti-parallel
Strand 4
B
198 203anti-parallel
Strand 5
B
281 285anti-parallel
Strand 6
B
288 292anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
350 351anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 400first strand
Strand 2
B
368 373parallel
Strand 3
B
415 421parallel
Strand 4
B
442 447parallel
Strand 5
B
460 463parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
566 571first strand
Strand 2
B
539 544parallel
Strand 3
B
589 593parallel
Strand 4
B
617 621parallel
Strand 5
B
634 637parallel
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