Analysis of interatomic Contacts of Structural Units in PDB entry:
7NE0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NE0 entry

There are 4 chains in PDB entry 7NE0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 38	LYS 453
B	THR 764	PRO 1067
C	PRO 138	ASP 168
D	PRO 169	UNK 1339

There are 8 helices in PDB entry 7NE0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	110	Right-handed alpha
Helix 2	AA2	A	180	186	Right-handed alpha
Helix 3	AA3	A	228	234	Right-handed 310
Helix 4	AA4	A	235	242	Right-handed alpha
Helix 5	AA5	A	264	270	Right-handed alpha
Helix 6	AA6	A	353	360	Right-handed alpha
Helix 7	AA7	D	297	301	Right-handed alpha
Helix 8	AA8	D	1331	1337	Right-handed alpha

There are 15 sheets in PDB entry 7NE0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	132	137	anti-parallel
Strand 3	A	246	253	anti-parallel
Strand 4	A	158	164	anti-parallel
Strand 5	A	172	178	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	83	first strand
Strand 2	A	86	94	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	221	first strand
Strand 2	A	142	150	anti-parallel
Strand 3	A	278	285	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	296	first strand
Strand 2	A	302	304	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	352	first strand
Strand 2	A	366	369	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	389	first strand
Strand 2	A	401	403	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	780	first strand
Strand 2	B	785	790	anti-parallel
Strand 3	B	824	827	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	819	first strand
Strand 2	B	801	806	anti-parallel
Strand 3	B	835	843	anti-parallel
Strand 4	B	852	857	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	876	879	first strand
Strand 2	B	885	888	anti-parallel
Strand 3	B	929	932	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	921	925	first strand
Strand 2	B	905	911	anti-parallel
Strand 3	B	940	948	anti-parallel
Strand 4	B	960	963	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	980	first strand
Strand 2	B	988	991	anti-parallel
Strand 3	B	1031	1034	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1021	1026	first strand
Strand 2	B	1004	1010	anti-parallel
Strand 3	B	1042	1049	anti-parallel
Strand 4	B	1062	1065	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	172	first strand
Strand 2	D	178	180	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	234	first strand
Strand 2	D	212	220	anti-parallel
Strand 3	D	195	202	anti-parallel
Strand 4	D	187	191	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	261	first strand
Strand 2	D	269	273	anti-parallel
Strand 3	D	278	285	anti-parallel
Strand 4	D	288	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NE0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NE0