Analysis of interatomic Contacts of Structural Units in PDB entry:
7NE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NE1 entry

There are 2 chains in PDB entry 7NE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 38CYS 451
B
 GLY 765ALA 1073
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7NE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 109Right-handed 310
Helix 2
AA2
A
180 186Right-handed alpha
Helix 3
AA3
A
226 234Right-handed 310
Helix 4
AA4
A
235 242Right-handed alpha
Helix 5
AA5
A
265 270Right-handed alpha
Helix 6
AA6
A
353 360Right-handed alpha
Helix 7
AA7
A
397 399Right-handed 310
Helix 8
AA8
B
1016 1020Right-handed 310
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There are 12 sheets in PDB entry 7NE1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
246 253anti-parallel
Strand 4
A
158 164anti-parallel
Strand 5
A
171 177anti-parallel
Strand 6
A
202 204parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 83first strand
Strand 2
A
86 94anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
142 150anti-parallel
Strand 3
A
278 285anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
302 304anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 352first strand
Strand 2
A
366 369anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
401 403anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
775 780first strand
Strand 2
B
785 790anti-parallel
Strand 3
B
824 827anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
814 819first strand
Strand 2
B
801 808anti-parallel
Strand 3
B
835 843anti-parallel
Strand 4
B
852 857anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
876 879first strand
Strand 2
B
885 888anti-parallel
Strand 3
B
929 931anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
921 925first strand
Strand 2
B
905 912anti-parallel
Strand 3
B
940 948anti-parallel
Strand 4
B
960 963anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
977 980first strand
Strand 2
B
988 991anti-parallel
Strand 3
B
1031 1034anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1021 1026first strand
Strand 2
B
1004 1010anti-parallel
Strand 3
B
1042 1050anti-parallel
Strand 4
B
1062 1065anti-parallel
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