Analysis of interatomic Contacts of Structural Units in PDB entry:
7NE2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NE2 entry

There are 4 chains in PDB entry 7NE2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2ARG 291
B
 MET 1ARG 291
C
 ASN 2ARG 291
D
 HIS 0ARG 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 7NE2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 10Right-handed 310
Helix 2
AA2
A
24 34Right-handed alpha
Helix 3
AA3
A
41 57Right-handed alpha
Helix 4
AA4
A
58 60Right-handed 310
Helix 5
AA5
A
70 77Right-handed alpha
Helix 6
AA6
A
111 118Right-handed alpha
Helix 7
AA7
A
134 151Right-handed alpha
Helix 8
AA8
A
172 185Right-handed alpha
Helix 9
AA9
A
197 201Right-handed 310
Helix 10
AB1
A
203 216Right-handed alpha
Helix 11
AB2
A
233 244Right-handed alpha
Helix 12
AB3
A
252 257Right-handed alpha
Helix 13
AB4
A
258 260Right-handed 310
Helix 14
AB5
A
264 272Right-handed alpha
Helix 15
AB6
A
272 290Right-handed alpha
Helix 16
AB7
B
5 10Right-handed 310
Helix 17
AB8
B
24 34Right-handed alpha
Helix 18
AB9
B
41 57Right-handed alpha
Helix 19
AC1
B
58 60Right-handed 310
Helix 20
AC2
B
70 77Right-handed alpha
Helix 21
AC3
B
111 118Right-handed alpha
Helix 22
AC4
B
134 151Right-handed alpha
Helix 23
AC5
B
172 185Right-handed alpha
Helix 24
AC6
B
196 201Right-handed 310
Helix 25
AC7
B
203 216Right-handed alpha
Helix 26
AC8
B
233 244Right-handed alpha
Helix 27
AC9
B
252 257Right-handed alpha
Helix 28
AD1
B
258 260Right-handed 310
Helix 29
AD2
B
264 272Right-handed alpha
Helix 30
AD3
B
272 290Right-handed alpha
Helix 31
AD4
C
5 10Right-handed 310
Helix 32
AD5
C
24 34Right-handed alpha
Helix 33
AD6
C
41 57Right-handed alpha
Helix 34
AD7
C
58 60Right-handed 310
Helix 35
AD8
C
70 77Right-handed alpha
Helix 36
AD9
C
111 118Right-handed alpha
Helix 37
AE1
C
134 152Right-handed alpha
Helix 38
AE2
C
172 185Right-handed alpha
Helix 39
AE3
C
196 201Right-handed 310
Helix 40
AE4
C
203 216Right-handed alpha
Helix 41
AE5
C
233 244Right-handed alpha
Helix 42
AE6
C
252 257Right-handed alpha
Helix 43
AE7
C
258 260Right-handed 310
Helix 44
AE8
C
264 272Right-handed alpha
Helix 45
AE9
C
272 290Right-handed alpha
Helix 46
AF1
D
5 10Right-handed 310
Helix 47
AF2
D
24 34Right-handed alpha
Helix 48
AF3
D
41 57Right-handed alpha
Helix 49
AF4
D
58 60Right-handed 310
Helix 50
AF5
D
70 77Right-handed alpha
Helix 51
AF6
D
111 118Right-handed alpha
Helix 52
AF7
D
134 151Right-handed alpha
Helix 53
AF8
D
172 185Right-handed alpha
Helix 54
AF9
D
197 201Right-handed 310
Helix 55
AG1
D
203 216Right-handed alpha
Helix 56
AG2
D
233 244Right-handed alpha
Helix 57
AG3
D
252 257Right-handed alpha
Helix 58
AG4
D
258 260Right-handed 310
Helix 59
AG5
D
264 272Right-handed alpha
Helix 60
AG6
D
272 290Right-handed alpha
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There are 8 sheets in PDB entry 7NE2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
62 65parallel
Strand 3
A
85 89parallel
Strand 4
A
122 129parallel
Strand 5
A
155 162parallel
Strand 6
A
191 195parallel
Strand 7
A
222 225parallel
Strand 8
A
248 251parallel
Strand 9
A
16 20parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
99 106anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
62 65parallel
Strand 3
B
85 89parallel
Strand 4
B
120 129parallel
Strand 5
B
155 162parallel
Strand 6
B
191 194parallel
Strand 7
B
222 224parallel
Strand 8
B
248 251parallel
Strand 9
B
16 20parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 96first strand
Strand 2
B
99 106anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 20first strand
Strand 2
C
62 65parallel
Strand 3
C
85 89parallel
Strand 4
C
120 129parallel
Strand 5
C
155 162parallel
Strand 6
C
191 194parallel
Strand 7
C
222 224parallel
Strand 8
C
248 251parallel
Strand 9
C
16 20parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 96first strand
Strand 2
C
99 106anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 20first strand
Strand 2
D
62 65parallel
Strand 3
D
85 89parallel
Strand 4
D
120 129parallel
Strand 5
D
155 162parallel
Strand 6
D
191 195parallel
Strand 7
D
222 225parallel
Strand 8
D
248 251parallel
Strand 9
D
16 20parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
91 96first strand
Strand 2
D
99 106anti-parallel
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