Analysis of interatomic Contacts of Structural Units in PDB entry:
7NE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NE5 entry

There is 1 chain in PDB entry 7NE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2GLU 677
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7NE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
35 53Right-handed alpha
Helix 3
AA3
A
56 70Right-handed alpha
Helix 4
AA4
A
117 121Right-handed alpha
Helix 5
AA5
A
209 213Right-handed 310
Helix 6
AA6
A
302 306Right-handed 310
Helix 7
AA7
A
410 412Right-handed 310
Helix 8
AA8
A
467 472Right-handed alpha
Helix 9
AA9
A
489 495Right-handed alpha
Helix 10
AB1
A
496 500Right-handed 310
Helix 11
AB2
A
501 518Right-handed alpha
Helix 12
AB3
A
532 545Right-handed alpha
Helix 13
AB4
A
546 549Right-handed 310
Helix 14
AB5
A
560 566Right-handed alpha
Helix 15
AB6
A
572 575Right-handed 310
Helix 16
AB7
A
576 581Right-handed alpha
Helix 17
AB8
A
585 594Right-handed alpha
Helix 18
AB9
A
596 601Right-handed alpha
Helix 19
AC1
A
622 636Right-handed alpha
Helix 20
AC2
A
657 677Right-handed alpha
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There are 9 sheets in PDB entry 7NE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
19 23anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
85 91anti-parallel
Strand 3
A
80 82anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
85 91anti-parallel
Strand 3
A
99 104anti-parallel
Strand 4
A
112 116anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 134first strand
Strand 2
A
140 146anti-parallel
Strand 3
A
153 159anti-parallel
Strand 4
A
170 179anti-parallel
Strand 5
A
185 191anti-parallel
Strand 6
A
198 205anti-parallel
Strand 7
A
214 218anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 230first strand
Strand 2
A
236 242anti-parallel
Strand 3
A
247 253anti-parallel
Strand 4
A
262 263anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 278first strand
Strand 2
A
281 286anti-parallel
Strand 3
A
294 298anti-parallel
Strand 4
A
307 310anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 323first strand
Strand 2
A
327 334anti-parallel
Strand 3
A
337 344anti-parallel
Strand 4
A
350 352anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
374 381anti-parallel
Strand 3
A
387 392anti-parallel
Strand 4
A
398 403anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 422first strand
Strand 2
A
428 436anti-parallel
Strand 3
A
476 480anti-parallel
Strand 4
A
447 450parallel
Strand 5
A
526 531parallel
Strand 6
A
551 555parallel
Strand 7
A
608 614parallel
Strand 8
A
642 647parallel
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