Analysis of interatomic Contacts of Structural Units in PDB entry:
7NEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NEB entry

There is 1 chain in PDB entry 7NEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ARG 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 7NEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 23Right-handed 310
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
57 72Right-handed alpha
Helix 4
AA4
A
79 95Right-handed alpha
Helix 5
AA5
A
164 179Right-handed alpha
Helix 6
AA6
A
213 217Right-handed 310
Helix 7
AA7
A
221 234Right-handed alpha
Helix 8
AA8
A
245 251Right-handed alpha
Helix 9
AA9
A
281 296Right-handed alpha
Helix 10
AB1
A
299 304Right-handed 310
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There are 4 sheets in PDB entry 7NEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
100 109anti-parallel
Strand 5
A
38 39anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
100 109anti-parallel
Strand 5
A
42 47anti-parallel
Strand 6
A
52 56anti-parallel
Strand 7
A
306 310anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
183 187anti-parallel
Strand 3
A
141 145parallel
Strand 4
A
263 270parallel
Strand 5
A
254 259anti-parallel
Strand 6
A
200 205anti-parallel
Strand 7
A
208 211anti-parallel
Strand 8
A
238 241parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
183 187anti-parallel
Strand 3
A
141 145parallel
Strand 4
A
263 270parallel
Strand 5
A
273 274anti-parallel
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