Analysis of interatomic Contacts of Structural Units in PDB entry:
7NED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NED entry

There is 1 chain in PDB entry 7NED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ASN 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7NED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
51 65Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
104 114Right-handed alpha
Helix 6
AA6
A
132 151Right-handed alpha
Helix 7
AA7
A
168 170Right-handed 310
Helix 8
AA8
A
171 179Right-handed alpha
Helix 9
AA9
A
189 199Right-handed alpha
Helix 10
AB1
A
208 223Right-handed alpha
Helix 11
AB2
A
233 244Right-handed alpha
Helix 12
AB3
A
270 272Right-handed 310
Helix 13
AB4
A
273 281Right-handed alpha
Helix 14
AB5
A
281 306Right-handed alpha
Helix 15
AB6
A
316 324Right-handed alpha
Helix 16
AB7
A
328 332Right-handed 310
Helix 17
AB8
A
335 339Right-handed alpha
Helix 18
AB9
A
340 345Right-handed alpha
Helix 19
AC1
A
359 374Right-handed alpha
Helix 20
AC2
A
377 391Right-handed alpha
Helix 21
AC3
A
406 421Right-handed alpha
Helix 22
AC4
A
458 470Right-handed alpha
Helix 23
AC5
A
482 486Right-handed 310
Helix 24
AC6
A
501 526Right-handed alpha
Helix 25
AC7
A
528 539Right-handed alpha
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There are 4 sheets in PDB entry 7NED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
46 47anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
69 74anti-parallel
Strand 3
A
91 95parallel
Strand 4
A
475 480parallel
Strand 5
A
490 498anti-parallel
Strand 6
A
428 432anti-parallel
Strand 7
A
351 355anti-parallel
Strand 8
A
398 400anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
69 74anti-parallel
Strand 3
A
91 95parallel
Strand 4
A
475 480parallel
Strand 5
A
490 498anti-parallel
Strand 6
A
440 441anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
226 231parallel
Strand 3
A
182 187parallel
Strand 4
A
159 163parallel
Strand 5
A
250 251parallel
Strand 6
A
309 312parallel
Strand 7
A
333 334parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il