Analysis of interatomic Contacts of Structural Units in PDB entry:
7NEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NEE entry

There is 1 chain in PDB entry 7NEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 24VAL 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7NEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 49Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
76 88Right-handed alpha
Helix 4
AA4
A
97 106Right-handed alpha
Helix 5
AA5
A
116 122Right-handed 310
Helix 6
AA6
A
125 138Right-handed alpha
Helix 7
AA7
A
185 199Right-handed alpha
Helix 8
AA8
A
205 213Right-handed alpha
Helix 9
AA9
A
224 234Right-handed alpha
Helix 10
AB1
A
286 299Right-handed alpha
Helix 11
AB2
A
329 348Right-handed alpha
Helix 12
AB3
A
359 362Right-handed 310
Helix 13
AB4
A
368 376Right-handed alpha
Helix 14
AB5
A
397 399Right-handed 310
Helix 15
AB6
A
400 423Right-handed alpha
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There are 2 sheets in PDB entry 7NEE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
68 73anti-parallel
Strand 3
A
26 31anti-parallel
Strand 4
A
91 95anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 151first strand
Strand 2
A
157 163anti-parallel
Strand 3
A
216 220anti-parallel
Strand 4
A
173 177parallel
Strand 5
A
303 310parallel
Strand 6
A
380 385parallel
Strand 7
A
315 318anti-parallel
Strand 8
A
354 357parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il