Analysis of interatomic Contacts of Structural Units in PDB entry:
7NF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NF7 entry

There is 1 chain in PDB entry 7NF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 111CYS 685
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7NF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 121Right-handed alpha
Helix 2
AA2
A
127 131Right-handed 310
Helix 3
AA3
A
141 148Right-handed alpha
Helix 4
AA4
A
148 155Right-handed alpha
Helix 5
AA5
A
185 188Right-handed 310
Helix 6
AA6
A
189 203Right-handed alpha
Helix 7
AA7
A
220 227Right-handed alpha
Helix 8
AA8
A
230 236Right-handed 310
Helix 9
AA9
A
289 306Right-handed alpha
Helix 10
AB1
A
315 319Right-handed 310
Helix 11
AB2
A
336 340Right-handed 310
Helix 12
AB3
A
342 344Right-handed 310
Helix 13
AB4
A
356 370Right-handed alpha
Helix 14
AB5
A
392 396Right-handed 310
Helix 15
AB6
A
420 435Right-handed alpha
Helix 16
AB7
A
452 457Right-handed alpha
Helix 17
AB8
A
458 460Right-handed 310
Helix 18
AB9
A
461 472Right-handed alpha
Helix 19
AC1
A
481 485Right-handed 310
Helix 20
AC2
A
502 506Right-handed 310
Helix 21
AC3
A
514 519Right-handed 310
Helix 22
AC4
A
530 535Right-handed 310
Helix 23
AC5
A
537 542Right-handed alpha
Helix 24
AC6
A
547 561Right-handed alpha
Helix 25
AC7
A
587 590Right-handed 310
Helix 26
AC8
A
606 612Right-handed alpha
Helix 27
AC9
A
662 664Right-handed 310
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There are 8 sheets in PDB entry 7NF7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
380 384parallel
Strand 3
A
310 313parallel
Strand 4
A
206 211parallel
Strand 5
A
159 162parallel
Strand 6
A
123 126parallel
Strand 7
A
475 479parallel
Strand 8
A
442 444parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
176 183anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
272 275anti-parallel
Strand 3
A
264 267anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 245first strand
Strand 2
A
248 250anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
346 347anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 634first strand
Strand 2
A
617 623anti-parallel
Strand 3
A
645 650anti-parallel
Strand 4
A
592 597anti-parallel
Strand 5
A
580 585anti-parallel
Strand 6
A
569 572anti-parallel
Strand 7
A
666 667anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 605first strand
Strand 2
A
638 640anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 674first strand
Strand 2
A
681 682anti-parallel
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