Analysis of interatomic Contacts of Structural Units in PDB entry:
7NF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NF8 entry

There are 2 chains in PDB entry 7NF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 29GLU 483
A
 ARG 63CYS 685
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7NF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
31 44Right-handed alpha
Helix 2
AA2
B
50 60Right-handed alpha
Helix 3
AA3
B
63 90Right-handed alpha
Helix 4
AA4
B
96 104Right-handed alpha
Helix 5
AA5
B
105 119Right-handed alpha
Helix 6
AA6
B
119 137Right-handed alpha
Helix 7
AA7
B
138 142Right-handed 310
Helix 8
AA8
B
147 169Right-handed alpha
Helix 9
AA9
B
170 176Right-handed alpha
Helix 10
AB1
B
176 201Right-handed alpha
Helix 11
AB2
B
217 231Right-handed alpha
Helix 12
AB3
B
238 244Right-handed 310
Helix 13
AB4
B
247 258Right-handed alpha
Helix 14
AB5
B
259 276Right-handed alpha
Helix 15
AB6
B
279 284Right-handed alpha
Helix 16
AB7
B
288 298Right-handed alpha
Helix 17
AB8
B
303 323Right-handed alpha
Helix 18
AB9
B
323 334Right-handed alpha
Helix 19
AC1
B
338 343Right-handed 310
Helix 20
AC2
B
351 367Right-handed alpha
Helix 21
AC3
B
370 399Right-handed alpha
Helix 22
AC4
B
411 432Right-handed alpha
Helix 23
AC5
B
434 455Right-handed alpha
Helix 24
AC6
B
459 478Right-handed alpha
Helix 25
AC7
A
69 77Right-handed alpha
Helix 26
AC8
A
83 111Right-handed alpha
Helix 27
AC9
A
116 121Right-handed alpha
Helix 28
AD1
A
127 131Right-handed 310
Helix 29
AD2
A
141 148Right-handed alpha
Helix 30
AD3
A
148 153Right-handed alpha
Helix 31
AD4
A
185 188Right-handed 310
Helix 32
AD5
A
189 203Right-handed alpha
Helix 33
AD6
A
220 228Right-handed alpha
Helix 34
AD7
A
230 236Right-handed 310
Helix 35
AD8
A
289 306Right-handed alpha
Helix 36
AD9
A
342 344Right-handed 310
Helix 37
AE1
A
356 368Right-handed alpha
Helix 38
AE2
A
392 398Right-handed 310
Helix 39
AE3
A
412 416Right-handed 310
Helix 40
AE4
A
420 435Right-handed alpha
Helix 41
AE5
A
452 457Right-handed alpha
Helix 42
AE6
A
458 460Right-handed 310
Helix 43
AE7
A
461 472Right-handed alpha
Helix 44
AE8
A
514 519Right-handed 310
Helix 45
AE9
A
537 542Right-handed alpha
Helix 46
AF1
A
547 561Right-handed alpha
Helix 47
AF2
A
586 590Right-handed 310
Helix 48
AF3
A
606 611Right-handed alpha
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There are 9 sheets in PDB entry 7NF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
479 480anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 409first strand
Strand 2
A
380 384parallel
Strand 3
A
310 313parallel
Strand 4
A
206 211parallel
Strand 5
A
159 162parallel
Strand 6
A
123 126parallel
Strand 7
A
475 479parallel
Strand 8
A
442 444parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 170first strand
Strand 2
A
176 183anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
272 275anti-parallel
Strand 3
A
264 267anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
248 249anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
346 347anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 634first strand
Strand 2
A
617 623anti-parallel
Strand 3
A
645 650anti-parallel
Strand 4
A
592 597anti-parallel
Strand 5
A
580 585anti-parallel
Strand 6
A
569 572anti-parallel
Strand 7
A
666 667anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 605first strand
Strand 2
A
638 640anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 675first strand
Strand 2
A
680 682anti-parallel
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