Analysis of interatomic Contacts of Structural Units in PDB entry:
7NGH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NGH entry

There are 4 chains in PDB entry 7NGH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5SER 430
B
 LEU 5SER 430
C
 LEU 5SER 430
D
 GLN 5ALA 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 7NGH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
13 35Right-handed alpha
Helix 3
AA3
A
37 45Right-handed alpha
Helix 4
AA4
A
45 73Right-handed alpha
Helix 5
AA5
A
76 110Right-handed alpha
Helix 6
AA6
A
131 138Right-handed alpha
Helix 7
AA7
A
143 151Right-handed alpha
Helix 8
AA8
A
152 172Right-handed alpha
Helix 9
AA9
A
175 222Right-handed alpha
Helix 10
AB1
A
228 256Right-handed alpha
Helix 11
AB2
A
259 278Right-handed alpha
Helix 12
AB3
A
280 282Right-handed 310
Helix 13
AB4
A
283 294Right-handed alpha
Helix 14
AB5
A
298 313Right-handed alpha
Helix 15
AB6
A
314 332Right-handed alpha
Helix 16
AB7
A
337 355Right-handed alpha
Helix 17
AB8
A
360 373Right-handed alpha
Helix 18
AB9
A
381 420Right-handed alpha
Helix 19
AC1
A
424 429Right-handed alpha
Helix 20
AC2
B
7 12Right-handed alpha
Helix 21
AC3
B
13 36Right-handed alpha
Helix 22
AC4
B
37 45Right-handed alpha
Helix 23
AC5
B
45 58Right-handed alpha
Helix 24
AC6
B
59 72Right-handed alpha
Helix 25
AC7
B
76 110Right-handed alpha
Helix 26
AC8
B
131 138Right-handed alpha
Helix 27
AC9
B
143 150Right-handed alpha
Helix 28
AD1
B
152 172Right-handed alpha
Helix 29
AD2
B
175 222Right-handed alpha
Helix 30
AD3
B
228 257Right-handed alpha
Helix 31
AD4
B
259 278Right-handed alpha
Helix 32
AD5
B
280 282Right-handed 310
Helix 33
AD6
B
283 294Right-handed alpha
Helix 34
AD7
B
298 313Right-handed alpha
Helix 35
AD8
B
314 333Right-handed alpha
Helix 36
AD9
B
337 355Right-handed alpha
Helix 37
AE1
B
360 373Right-handed alpha
Helix 38
AE2
B
381 392Right-handed alpha
Helix 39
AE3
B
393 420Right-handed alpha
Helix 40
AE4
B
424 429Right-handed 310
Helix 41
AE5
C
13 36Right-handed alpha
Helix 42
AE6
C
37 45Right-handed alpha
Helix 43
AE7
C
45 58Right-handed alpha
Helix 44
AE8
C
60 75Right-handed alpha
Helix 45
AE9
C
76 110Right-handed alpha
Helix 46
AF1
C
131 138Right-handed alpha
Helix 47
AF2
C
143 151Right-handed alpha
Helix 48
AF3
C
153 171Right-handed alpha
Helix 49
AF4
C
175 222Right-handed alpha
Helix 50
AF5
C
228 256Right-handed alpha
Helix 51
AF6
C
259 278Right-handed alpha
Helix 52
AF7
C
280 282Right-handed 310
Helix 53
AF8
C
283 295Right-handed alpha
Helix 54
AF9
C
298 313Right-handed alpha
Helix 55
AG1
C
314 333Right-handed alpha
Helix 56
AG2
C
337 354Right-handed alpha
Helix 57
AG3
C
360 365Right-handed alpha
Helix 58
AG4
C
365 373Right-handed alpha
Helix 59
AG5
C
381 420Right-handed alpha
Helix 60
AG6
C
424 428Right-handed 310
Helix 61
AG7
D
66 69Right-handed 310
Helix 62
AG8
D
91 95Right-handed 310
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There are 3 sheets in PDB entry 7NGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 11first strand
Strand 2
D
24 28anti-parallel
Strand 3
D
82 85anti-parallel
Strand 4
D
74 77anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 16first strand
Strand 2
D
113 117parallel
Strand 3
D
96 102anti-parallel
Strand 4
D
38 43anti-parallel
Strand 5
D
50 55anti-parallel
Strand 6
D
62 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 16first strand
Strand 2
D
113 117parallel
Strand 3
D
96 102anti-parallel
Strand 4
D
108 109anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il