Analysis of interatomic Contacts of Structural Units in PDB entry:
7NJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NJ0 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7NJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 619SER 1125
A
 PRO 1127ARG 2120
B
 MET 1TYR 160
B
 HIS 162LEU 290
C
 ALA 162ALA 431
D
 GLN 5PRO 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 7NJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
621 639Right-handed alpha
Helix 2
AA2
A
648 661Right-handed alpha
Helix 3
AA3
A
668 703Right-handed alpha
Helix 4
AA4
A
718 725Right-handed alpha
Helix 5
AA5
A
729 733Right-handed 310
Helix 6
AA6
A
736 759Right-handed alpha
Helix 7
AA7
A
768 786Right-handed alpha
Helix 8
AA8
A
788 807Right-handed alpha
Helix 9
AA9
A
808 826Right-handed alpha
Helix 10
AB1
A
831 844Right-handed alpha
Helix 11
AB2
A
850 872Right-handed alpha
Helix 12
AB3
A
873 886Right-handed alpha
Helix 13
AB4
A
888 892Right-handed 310
Helix 14
AB5
A
895 912Right-handed alpha
Helix 15
AB6
A
920 930Right-handed alpha
Helix 16
AB7
A
934 954Right-handed alpha
Helix 17
AB8
A
975 999Right-handed alpha
Helix 18
AB9
A
1003 1022Right-handed alpha
Helix 19
AC1
A
1024 1041Right-handed alpha
Helix 20
AC2
A
1043 1059Right-handed alpha
Helix 21
AC3
A
1105 1109Right-handed 310
Helix 22
AC4
A
1153 1174Right-handed alpha
Helix 23
AC5
A
1178 1207Right-handed alpha
Helix 24
AC6
A
1220 1234Right-handed alpha
Helix 25
AC7
A
1244 1257Right-handed alpha
Helix 26
AC8
A
1264 1278Right-handed alpha
Helix 27
AC9
A
1286 1291Right-handed 310
Helix 28
AD1
A
1573 1589Right-handed alpha
Helix 29
AD2
A
1593 1608Right-handed alpha
Helix 30
AD3
A
1614 1622Right-handed alpha
Helix 31
AD4
A
1626 1645Right-handed alpha
Helix 32
AD5
A
1668 1678Right-handed alpha
Helix 33
AD6
A
1687 1701Right-handed alpha
Helix 34
AD7
A
1744 1746Right-handed 310
Helix 35
AD8
A
1749 1768Right-handed alpha
Helix 36
AD9
A
1772 1797Right-handed alpha
Helix 37
AE1
A
1799 1806Right-handed 310
Helix 38
AE2
A
1814 1828Right-handed alpha
Helix 39
AE3
A
1835 1843Right-handed alpha
Helix 40
AE4
A
1850 1862Right-handed alpha
Helix 41
AE5
A
1869 1880Right-handed alpha
Helix 42
AE6
A
1898 1902Right-handed 310
Helix 43
AE7
A
1903 1907Right-handed 310
Helix 44
AE8
A
1921 1933Right-handed alpha
Helix 45
AE9
A
1936 1941Right-handed alpha
Helix 46
AF1
A
1958 1972Right-handed alpha
Helix 47
AF2
A
1984 1994Right-handed alpha
Helix 48
AF3
A
2012 2018Right-handed alpha
Helix 49
AF4
A
2044 2052Right-handed alpha
Helix 50
AF5
A
2065 2084Right-handed alpha
Helix 51
AF6
A
2088 2096Right-handed alpha
Helix 52
AF7
B
39 43Right-handed 310
Helix 53
AF8
B
45 56Right-handed alpha
Helix 54
AF9
B
86 92Right-handed alpha
Helix 55
AG1
B
101 122Right-handed alpha
Helix 56
AG2
B
166 170Right-handed 310
Helix 57
AG3
B
171 176Right-handed alpha
Helix 58
AG4
B
184 199Right-handed alpha
Helix 59
AG5
B
208 221Right-handed alpha
Helix 60
AG6
B
248 252Right-handed 310
Helix 61
AG7
B
257 268Right-handed alpha
Helix 62
AG8
B
277 282Right-handed alpha
Helix 63
AG9
B
283 288Right-handed 310
Helix 64
AH1
C
170 185Right-handed alpha
Helix 65
AH2
C
198 217Right-handed alpha
Helix 66
AH3
C
219 235Right-handed alpha
Helix 67
AH4
C
243 259Right-handed alpha
Helix 68
AH5
C
265 273Right-handed alpha
Helix 69
AH6
C
278 293Right-handed alpha
Helix 70
AH7
C
301 313Right-handed alpha
Helix 71
AH8
C
316 333Right-handed alpha
Helix 72
AH9
C
340 356Right-handed alpha
Helix 73
AI1
C
362 370Right-handed alpha
Helix 74
AI2
C
376 392Right-handed alpha
Helix 75
AI3
C
399 404Right-handed alpha
Helix 76
AI4
C
416 419Right-handed 310
Helix 77
AI5
C
420 430Right-handed alpha
Helix 78
AI6
D
25 30Right-handed alpha
Helix 79
AI7
D
39 47Right-handed alpha
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There are 6 sheets in PDB entry 7NJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1739 1742first strand
Strand 2
A
1724 1727anti-parallel
Strand 3
A
1706 1714anti-parallel
Strand 4
A
1890 1895parallel
Strand 5
A
1916 1917parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1976 1977first strand
Strand 2
A
1948 1951parallel
Strand 3
A
1997 2000parallel
Strand 4
A
2023 2024parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 13first strand
Strand 2
B
16 23anti-parallel
Strand 3
B
29 35anti-parallel
Strand 4
B
77 81anti-parallel
Strand 5
B
66 70anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
151 152anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
143 144anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 8first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
66 72anti-parallel
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