Analysis of interatomic Contacts of Structural Units in PDB entry:
7NJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NJ1 entry

There are 2 chains in PDB entry 7NJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 243ARG 2120
B
 TYR 111PRO 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 7NJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
244 265Right-handed alpha
Helix 2
AA2
A
268 282Right-handed alpha
Helix 3
AA3
A
286 304Right-handed alpha
Helix 4
AA4
A
309 326Right-handed alpha
Helix 5
AA5
A
332 349Right-handed alpha
Helix 6
AA6
A
356 380Right-handed alpha
Helix 7
AA7
A
380 386Right-handed alpha
Helix 8
AA8
A
386 415Right-handed alpha
Helix 9
AA9
A
419 441Right-handed alpha
Helix 10
AB1
A
445 469Right-handed alpha
Helix 11
AB2
A
472 490Right-handed alpha
Helix 12
AB3
A
499 517Right-handed alpha
Helix 13
AB4
A
519 534Right-handed alpha
Helix 14
AB5
A
542 559Right-handed alpha
Helix 15
AB6
A
561 567Right-handed alpha
Helix 16
AB7
A
568 573Right-handed alpha
Helix 17
AB8
A
577 595Right-handed alpha
Helix 18
AB9
A
599 614Right-handed alpha
Helix 19
AC1
A
618 637Right-handed alpha
Helix 20
AC2
A
648 663Right-handed alpha
Helix 21
AC3
A
669 702Right-handed alpha
Helix 22
AC4
A
729 737Right-handed alpha
Helix 23
AC5
A
739 759Right-handed alpha
Helix 24
AC6
A
768 786Right-handed alpha
Helix 25
AC7
A
788 806Right-handed alpha
Helix 26
AC8
A
808 826Right-handed alpha
Helix 27
AC9
A
829 845Right-handed alpha
Helix 28
AD1
A
850 871Right-handed alpha
Helix 29
AD2
A
873 886Right-handed alpha
Helix 30
AD3
A
887 892Right-handed 310
Helix 31
AD4
A
894 913Right-handed alpha
Helix 32
AD5
A
920 929Right-handed alpha
Helix 33
AD6
A
934 954Right-handed alpha
Helix 34
AD7
A
975 1001Right-handed alpha
Helix 35
AD8
A
1003 1022Right-handed alpha
Helix 36
AD9
A
1023 1041Right-handed alpha
Helix 37
AE1
A
1043 1062Right-handed alpha
Helix 38
AE2
A
1147 1153Right-handed alpha
Helix 39
AE3
A
1153 1174Right-handed alpha
Helix 40
AE4
A
1177 1207Right-handed alpha
Helix 41
AE5
A
1217 1232Right-handed alpha
Helix 42
AE6
A
1232 1237Right-handed alpha
Helix 43
AE7
A
1246 1257Right-handed alpha
Helix 44
AE8
A
1262 1278Right-handed alpha
Helix 45
AE9
A
1573 1589Right-handed alpha
Helix 46
AF1
A
1594 1608Right-handed alpha
Helix 47
AF2
A
1612 1623Right-handed alpha
Helix 48
AF3
A
1625 1647Right-handed alpha
Helix 49
AF4
A
1668 1678Right-handed alpha
Helix 50
AF5
A
1688 1701Right-handed alpha
Helix 51
AF6
A
1750 1768Right-handed alpha
Helix 52
AF7
A
1772 1798Right-handed alpha
Helix 53
AF8
A
1803 1807Right-handed 310
Helix 54
AF9
A
1814 1830Right-handed alpha
Helix 55
AG1
A
1836 1843Right-handed alpha
Helix 56
AG2
A
1845 1849Right-handed 310
Helix 57
AG3
A
1850 1862Right-handed alpha
Helix 58
AG4
A
1866 1880Right-handed alpha
Helix 59
AG5
A
1903 1907Right-handed 310
Helix 60
AG6
A
1920 1934Right-handed alpha
Helix 61
AG7
A
1936 1941Right-handed alpha
Helix 62
AG8
A
1958 1972Right-handed alpha
Helix 63
AG9
A
1984 1995Right-handed alpha
Helix 64
AH1
A
2011 2017Right-handed alpha
Helix 65
AH2
A
2044 2051Right-handed alpha
Helix 66
AH3
A
2066 2084Right-handed alpha
Helix 67
AH4
A
2088 2096Right-handed alpha
Helix 68
AH5
A
2097 2099Right-handed 310
Helix 69
AH6
B
121 126Right-handed 310
Helix 70
AH7
B
154 158Right-handed 310
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There are 2 sheets in PDB entry 7NJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1737 1742first strand
Strand 2
A
1724 1730anti-parallel
Strand 3
A
1706 1714anti-parallel
Strand 4
A
1890 1894parallel
Strand 5
A
1915 1917parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1978 1979first strand
Strand 2
A
1948 1952parallel
Strand 3
A
1997 2001parallel
Strand 4
A
2023 2027parallel
Strand 5
A
2056 2059parallel
Strand 6
A
2111 2114anti-parallel
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