Analysis of interatomic Contacts of Structural Units in PDB entry:
7NJL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NJL entry

There are 20 chains in PDB entry 7NJL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	VAL 521
B	THR 5	VAL 521
C	ILE 6	PRO 545
D	THR 8	LEU 475
E	THR 8	LEU 471
F	LYS 7	LEU 475
G	ALA 3	ALA 304
H	ASP 3	ILE 120
L	LEU 3	GLN 86
M	LEU 3	GLN 86
N	LEU 3	GLN 86
O	LEU 3	GLN 86
P	ASP 2	GLN 86
Q	LEU 3	GLN 86
R	ASP 2	GLN 86
S	LEU 3	GLN 86
T	LEU 3	GLN 86
a	ALA 10	LEU 247
b	SER 22	SER 166
d	MET 1	ASP 445

There are182 helices in PDB entry 7NJL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	21	Right-handed 310
Helix 2	2	A	82	84	Right-handed 310
Helix 3	3	A	104	106	Right-handed 310
Helix 4	4	A	154	159	Right-handed alpha
Helix 5	5	A	178	194	Right-handed alpha
Helix 6	6	A	213	225	Right-handed alpha
Helix 7	7	A	243	263	Right-handed alpha
Helix 8	8	A	274	287	Right-handed alpha
Helix 9	9	A	294	296	Right-handed 310
Helix 10	10	A	301	310	Right-handed alpha
Helix 11	11	A	317	319	Right-handed 310
Helix 12	12	A	340	348	Right-handed alpha
Helix 13	13	A	357	362	Right-handed alpha
Helix 14	14	A	378	381	Right-handed 310
Helix 15	15	A	384	390	Right-handed alpha
Helix 16	16	A	393	406	Right-handed alpha
Helix 17	17	A	415	431	Right-handed alpha
Helix 18	18	A	441	452	Right-handed alpha
Helix 19	19	A	461	478	Right-handed 310
Helix 20	20	A	481	489	Right-handed alpha
Helix 21	21	A	494	510	Right-handed alpha
Helix 22	22	B	8	22	Right-handed alpha
Helix 23	23	B	82	84	Right-handed 310
Helix 24	24	B	104	106	Right-handed 310
Helix 25	25	B	139	141	Right-handed 310
Helix 26	26	B	154	159	Right-handed alpha
Helix 27	27	B	178	195	Right-handed alpha
Helix 28	28	B	213	225	Right-handed alpha
Helix 29	29	B	229	231	Right-handed 310
Helix 30	30	B	243	263	Right-handed alpha
Helix 31	31	B	274	287	Right-handed alpha
Helix 32	32	B	294	296	Right-handed 310
Helix 33	33	B	301	310	Right-handed alpha
Helix 34	34	B	317	319	Right-handed 310
Helix 35	35	B	340	348	Right-handed alpha
Helix 36	36	B	357	362	Right-handed alpha
Helix 37	37	B	384	405	Right-handed alpha
Helix 38	38	B	415	431	Right-handed alpha
Helix 39	39	B	441	452	Right-handed alpha
Helix 40	40	B	461	477	Right-handed 310
Helix 41	41	B	481	488	Right-handed alpha
Helix 42	42	B	494	509	Right-handed alpha
Helix 43	43	C	8	21	Right-handed alpha
Helix 44	44	C	59	61	Right-handed 310
Helix 45	45	C	82	84	Right-handed 310
Helix 46	46	C	104	106	Right-handed 310
Helix 47	47	C	139	141	Right-handed 310
Helix 48	48	C	154	159	Right-handed alpha
Helix 49	49	C	178	195	Right-handed alpha
Helix 50	50	C	213	225	Right-handed alpha
Helix 51	51	C	229	231	Right-handed 310
Helix 52	52	C	243	262	Right-handed alpha
Helix 53	53	C	274	288	Right-handed alpha
Helix 54	54	C	294	296	Right-handed 310
Helix 55	55	C	301	311	Right-handed alpha
Helix 56	56	C	317	319	Right-handed 310
Helix 57	57	C	340	348	Right-handed alpha
Helix 58	58	C	357	361	Right-handed alpha
Helix 59	59	C	378	381	Right-handed 310
Helix 60	60	C	384	389	Right-handed alpha
Helix 61	61	C	393	406	Right-handed alpha
Helix 62	62	C	415	430	Right-handed alpha
Helix 63	63	C	441	452	Right-handed alpha
Helix 64	64	C	461	477	Right-handed 310
Helix 65	65	C	481	489	Right-handed alpha
Helix 66	66	C	494	510	Right-handed alpha
Helix 67	67	D	92	94	Right-handed 310
Helix 68	68	D	127	129	Right-handed 310
Helix 69	69	D	142	147	Right-handed alpha
Helix 70	70	D	166	177	Right-handed alpha
Helix 71	71	D	194	206	Right-handed alpha
Helix 72	72	D	210	212	Right-handed 310
Helix 73	73	D	224	243	Right-handed alpha
Helix 74	74	D	256	265	Right-handed 310
Helix 75	75	D	276	278	Right-handed 310
Helix 76	76	D	283	293	Right-handed alpha
Helix 77	77	D	311	313	Right-handed 310
Helix 78	78	D	318	326	Right-handed alpha
Helix 79	79	D	335	339	Right-handed alpha
Helix 80	80	D	358	361	Right-handed alpha
Helix 81	81	D	363	388	Right-handed alpha
Helix 82	82	D	391	393	Right-handed 310
Helix 83	83	D	396	412	Right-handed alpha
Helix 84	84	D	420	423	Right-handed alpha
Helix 85	85	D	432	443	Right-handed alpha
Helix 86	86	D	452	455	Right-handed 310
Helix 87	87	D	461	470	Right-handed alpha
Helix 88	88	E	92	94	Right-handed 310
Helix 89	89	E	127	129	Right-handed 310
Helix 90	90	E	142	146	Right-handed alpha
Helix 91	91	E	166	180	Right-handed alpha
Helix 92	92	E	194	206	Right-handed alpha
Helix 93	93	E	210	212	Right-handed 310
Helix 94	94	E	224	243	Right-handed alpha
Helix 95	95	E	256	269	Right-handed alpha
Helix 96	96	E	276	278	Right-handed 310
Helix 97	97	E	283	293	Right-handed alpha
Helix 98	98	E	311	313	Right-handed 310
Helix 99	99	E	318	324	Right-handed alpha
Helix 100	100	E	335	340	Right-handed alpha
Helix 101	101	E	358	361	Right-handed alpha
Helix 102	102	E	363	389	Right-handed alpha
Helix 103	103	E	391	393	Right-handed 310
Helix 104	104	E	396	411	Right-handed alpha
Helix 105	105	E	417	421	Right-handed 310
Helix 106	106	E	432	444	Right-handed alpha
Helix 107	107	E	452	455	Right-handed 310
Helix 108	108	E	461	470	Right-handed alpha
Helix 109	109	F	92	94	Right-handed 310
Helix 110	110	F	127	129	Right-handed 310
Helix 111	111	F	142	147	Right-handed alpha
Helix 112	112	F	166	177	Right-handed alpha
Helix 113	113	F	194	206	Right-handed alpha
Helix 114	114	F	210	212	Right-handed 310
Helix 115	115	F	224	244	Right-handed alpha
Helix 116	116	F	256	269	Right-handed alpha
Helix 117	117	F	276	278	Right-handed 310
Helix 118	118	F	283	293	Right-handed alpha
Helix 119	119	F	311	313	Right-handed 310
Helix 120	120	F	318	326	Right-handed alpha
Helix 121	121	F	335	339	Right-handed alpha
Helix 122	122	F	358	361	Right-handed alpha
Helix 123	123	F	363	389	Right-handed alpha
Helix 124	124	F	396	411	Right-handed alpha
Helix 125	125	F	420	423	Right-handed alpha
Helix 126	126	F	432	443	Right-handed alpha
Helix 127	127	F	452	455	Right-handed 310
Helix 128	128	F	461	470	Right-handed alpha
Helix 129	129	G	4	42	Right-handed alpha
Helix 130	130	G	44	59	Right-handed alpha
Helix 131	131	G	92	109	Right-handed alpha
Helix 132	132	G	122	130	Right-handed alpha
Helix 133	133	G	147	165	Right-handed alpha
Helix 134	134	G	228	303	Right-handed alpha
Helix 135	135	H	87	89	Right-handed 310
Helix 136	136	H	92	100	Right-handed alpha
Helix 137	137	H	104	117	Right-handed alpha
Helix 138	138	L	5	45	Right-handed alpha
Helix 139	139	L	47	79	Right-handed 310
Helix 140	140	M	5	45	Right-handed alpha
Helix 141	141	M	47	79	Right-handed 310
Helix 142	142	N	5	45	Right-handed alpha
Helix 143	143	N	48	79	Right-handed 310
Helix 144	144	O	5	45	Right-handed alpha
Helix 145	145	O	47	79	Right-handed 310
Helix 146	146	P	5	45	Right-handed alpha
Helix 147	147	P	48	80	Right-handed 310
Helix 148	148	Q	5	45	Right-handed alpha
Helix 149	149	Q	47	50	Right-handed 310
Helix 150	150	Q	53	79	Right-handed alpha
Helix 151	151	R	5	45	Right-handed alpha
Helix 152	152	R	47	79	Right-handed 310
Helix 153	153	S	5	45	Right-handed alpha
Helix 154	154	S	47	79	Right-handed 310
Helix 155	155	T	5	45	Right-handed alpha
Helix 156	156	T	50	80	Right-handed alpha
Helix 157	157	a	29	52	Right-handed alpha
Helix 158	158	a	61	80	Right-handed alpha
Helix 159	159	a	89	108	Right-handed alpha
Helix 160	160	a	127	129	Right-handed 310
Helix 161	161	a	131	153	Right-handed alpha
Helix 162	162	a	155	164	Right-handed alpha
Helix 163	163	a	171	205	Right-handed alpha
Helix 164	164	a	208	244	Right-handed alpha
Helix 165	165	b	29	47	Right-handed 310
Helix 166	166	b	50	160	Right-handed alpha
Helix 167	167	d	2	138	Right-handed alpha
Helix 168	168	d	140	155	Right-handed alpha
Helix 169	169	d	174	191	Right-handed alpha
Helix 170	170	d	196	215	Right-handed alpha
Helix 171	171	d	219	224	Right-handed alpha
Helix 172	172	d	231	240	Right-handed alpha
Helix 173	173	d	247	258	Right-handed alpha
Helix 174	174	d	264	286	Right-handed 310
Helix 175	175	d	289	305	Right-handed alpha
Helix 176	176	d	307	313	Right-handed alpha
Helix 177	177	d	320	330	Right-handed alpha
Helix 178	178	d	339	350	Right-handed alpha
Helix 179	179	d	357	372	Right-handed alpha
Helix 180	180	d	387	401	Right-handed alpha
Helix 181	181	d	413	415	Right-handed 310
Helix 182	182	d	432	441	Right-handed alpha

There are 26 sheets in PDB entry 7NJL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	31	38	anti-parallel
Strand 3	A	41	45	anti-parallel
Strand 4	A	74	78	anti-parallel
Strand 5	A	63	69	anti-parallel
Strand 6	A	55	57	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	128	131	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	168	172	parallel
Strand 3	A	329	331	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	237	first strand
Strand 2	A	203	209	parallel
Strand 3	A	266	272	parallel
Strand 4	A	323	328	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	31	38	anti-parallel
Strand 3	B	41	45	anti-parallel
Strand 4	B	74	79	anti-parallel
Strand 5	B	62	69	anti-parallel
Strand 6	B	55	58	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	128	131	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	169	172	parallel
Strand 3	B	329	331	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	237	first strand
Strand 2	B	203	209	parallel
Strand 3	B	266	272	parallel
Strand 4	B	323	328	parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	90	93	anti-parallel
Strand 3	C	55	58	anti-parallel
Strand 4	C	63	69	anti-parallel
Strand 5	C	74	78	anti-parallel
Strand 6	C	41	46	anti-parallel
Strand 7	C	32	38	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	128	131	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	355	first strand
Strand 2	C	169	172	parallel
Strand 3	C	329	331	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	237	first strand
Strand 2	C	203	209	parallel
Strand 3	C	266	272	parallel
Strand 4	C	323	328	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	16	first strand
Strand 2	D	19	23	anti-parallel
Strand 3	D	61	66	anti-parallel
Strand 4	D	47	56	anti-parallel
Strand 5	D	35	40	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	117	119	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	332	first strand
Strand 2	D	155	160	parallel
Strand 3	D	302	309	parallel
Strand 4	D	249	254	parallel
Strand 5	D	184	190	parallel
Strand 6	D	213	218	parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	16	first strand
Strand 2	E	19	23	anti-parallel
Strand 3	E	61	66	anti-parallel
Strand 4	E	47	56	anti-parallel
Strand 5	E	35	40	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	117	119	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	332	first strand
Strand 2	E	155	159	parallel
Strand 3	E	302	307	parallel
Strand 4	E	249	254	parallel
Strand 5	E	184	192	parallel
Strand 6	E	213	219	parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	16	first strand
Strand 2	F	19	23	anti-parallel
Strand 3	F	61	66	anti-parallel
Strand 4	F	47	56	anti-parallel
Strand 5	F	35	40	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	89	first strand
Strand 2	F	117	119	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	329	332	first strand
Strand 2	F	155	160	parallel
Strand 3	F	302	309	parallel
Strand 4	F	249	254	parallel
Strand 5	F	184	190	parallel
Strand 6	F	213	218	parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	138	first strand
Strand 2	G	115	119	parallel
Strand 3	G	77	82	parallel
Strand 4	G	182	189	parallel
Strand 5	G	197	204	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	44	first strand
Strand 2	H	69	72	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	4	10	parallel
Strand 5	H	14	20	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	35	first strand
Strand 2	H	22	26	anti-parallel
Strand 3	H	50	54	anti-parallel
Strand 4	H	61	66	anti-parallel
Strand 5	H	83	86	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	20	22	first strand
Strand 2	a	25	27	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	406	411	first strand
Strand 2	d	376	381	parallel
Strand 3	d	420	423	anti-parallel
Strand 4	d	426	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NJL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NJL