Analysis of interatomic Contacts of Structural Units in PDB entry:
7NJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NJM entry

There are 20 chains in PDB entry 7NJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	VAL 521
B	THR 5	VAL 521
C	THR 5	PRO 545
D	THR 8	LEU 475
E	THR 8	LEU 471
F	LYS 7	LYS 474
G	ALA 3	ALA 304
H	ASP 3	ILE 120
L	LEU 3	GLN 86
M	LEU 3	GLN 86
N	LEU 3	GLN 86
O	LEU 3	GLN 86
P	LEU 3	GLN 86
Q	ASP 2	GLN 86
R	LEU 3	GLN 86
S	LEU 3	GLN 86
T	LEU 3	GLN 86
a	ALA 10	LEU 247
b	ASN 23	SER 166
d	MET 1	PRO 444

There are190 helices in PDB entry 7NJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	20	Right-handed alpha
Helix 2	AA2	A	81	85	Right-handed 310
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	A	138	142	Right-handed 310
Helix 5	AA5	A	153	160	Right-handed alpha
Helix 6	AA6	A	177	188	Right-handed alpha
Helix 7	AA7	A	189	195	Right-handed alpha
Helix 8	AA8	A	212	226	Right-handed alpha
Helix 9	AA9	A	242	264	Right-handed alpha
Helix 10	AB1	A	273	288	Right-handed alpha
Helix 11	AB2	A	293	297	Right-handed 310
Helix 12	AB3	A	300	310	Right-handed alpha
Helix 13	AB4	A	316	320	Right-handed 310
Helix 14	AB5	A	339	349	Right-handed alpha
Helix 15	AB6	A	356	363	Right-handed alpha
Helix 16	AB7	A	377	382	Right-handed 310
Helix 17	AB8	A	383	391	Right-handed alpha
Helix 18	AB9	A	392	403	Right-handed alpha
Helix 19	AC1	A	414	432	Right-handed alpha
Helix 20	AC2	A	440	453	Right-handed alpha
Helix 21	AC3	A	460	462	Right-handed 310
Helix 22	AC4	A	463	479	Right-handed alpha
Helix 23	AC5	A	479	490	Right-handed alpha
Helix 24	AC6	A	493	511	Right-handed alpha
Helix 25	AC7	B	9	22	Right-handed alpha
Helix 26	AC8	B	81	85	Right-handed 310
Helix 27	AC9	B	103	107	Right-handed 310
Helix 28	AD1	B	138	142	Right-handed 310
Helix 29	AD2	B	153	160	Right-handed alpha
Helix 30	AD3	B	177	188	Right-handed alpha
Helix 31	AD4	B	189	196	Right-handed alpha
Helix 32	AD5	B	212	226	Right-handed alpha
Helix 33	AD6	B	228	230	Right-handed 310
Helix 34	AD7	B	242	262	Right-handed alpha
Helix 35	AD8	B	273	288	Right-handed alpha
Helix 36	AD9	B	293	297	Right-handed 310
Helix 37	AE1	B	300	310	Right-handed alpha
Helix 38	AE2	B	316	320	Right-handed 310
Helix 39	AE3	B	339	349	Right-handed alpha
Helix 40	AE4	B	356	363	Right-handed alpha
Helix 41	AE5	B	383	406	Right-handed alpha
Helix 42	AE6	B	415	432	Right-handed alpha
Helix 43	AE7	B	440	453	Right-handed alpha
Helix 44	AE8	B	454	458	Right-handed 310
Helix 45	AE9	B	460	462	Right-handed 310
Helix 46	AF1	B	463	478	Right-handed alpha
Helix 47	AF2	B	480	490	Right-handed alpha
Helix 48	AF3	B	493	511	Right-handed alpha
Helix 49	AF4	C	7	22	Right-handed alpha
Helix 50	AF5	C	59	61	Right-handed 310
Helix 51	AF6	C	103	107	Right-handed 310
Helix 52	AF7	C	138	142	Right-handed 310
Helix 53	AF8	C	153	160	Right-handed alpha
Helix 54	AF9	C	177	189	Right-handed alpha
Helix 55	AG1	C	189	195	Right-handed alpha
Helix 56	AG2	C	212	226	Right-handed alpha
Helix 57	AG3	C	227	230	Right-handed 310
Helix 58	AG4	C	242	262	Right-handed alpha
Helix 59	AG5	C	273	288	Right-handed alpha
Helix 60	AG6	C	293	297	Right-handed 310
Helix 61	AG7	C	300	310	Right-handed alpha
Helix 62	AG8	C	339	349	Right-handed alpha
Helix 63	AG9	C	356	362	Right-handed alpha
Helix 64	AH1	C	377	382	Right-handed 310
Helix 65	AH2	C	383	407	Right-handed alpha
Helix 66	AH3	C	415	431	Right-handed alpha
Helix 67	AH4	C	440	453	Right-handed alpha
Helix 68	AH5	C	460	462	Right-handed 310
Helix 69	AH6	C	463	478	Right-handed alpha
Helix 70	AH7	C	480	490	Right-handed alpha
Helix 71	AH8	C	493	511	Right-handed alpha
Helix 72	AH9	D	126	130	Right-handed 310
Helix 73	AI1	D	141	148	Right-handed alpha
Helix 74	AI2	D	165	178	Right-handed alpha
Helix 75	AI3	D	193	207	Right-handed alpha
Helix 76	AI4	D	209	211	Right-handed 310
Helix 77	AI5	D	223	244	Right-handed alpha
Helix 78	AI6	D	255	268	Right-handed alpha
Helix 79	AI7	D	275	279	Right-handed 310
Helix 80	AI8	D	282	294	Right-handed alpha
Helix 81	AI9	D	311	314	Right-handed 310
Helix 82	AJ1	D	317	324	Right-handed alpha
Helix 83	AJ2	D	325	327	Right-handed 310
Helix 84	AJ3	D	334	340	Right-handed alpha
Helix 85	AJ4	D	357	362	Right-handed alpha
Helix 86	AJ5	D	362	390	Right-handed alpha
Helix 87	AJ6	D	391	394	Right-handed 310
Helix 88	AJ7	D	395	413	Right-handed alpha
Helix 89	AJ8	D	416	418	Right-handed 310
Helix 90	AJ9	D	419	424	Right-handed alpha
Helix 91	AK1	D	431	445	Right-handed alpha
Helix 92	AK2	D	451	456	Right-handed 310
Helix 93	AK3	D	460	472	Right-handed alpha
Helix 94	AK4	E	25	29	Right-handed 310
Helix 95	AK5	E	91	95	Right-handed 310
Helix 96	AK6	E	126	130	Right-handed 310
Helix 97	AK7	E	141	148	Right-handed alpha
Helix 98	AK8	E	165	181	Right-handed alpha
Helix 99	AK9	E	193	207	Right-handed alpha
Helix 100	AL1	E	209	211	Right-handed 310
Helix 101	AL2	E	223	244	Right-handed alpha
Helix 102	AL3	E	255	270	Right-handed alpha
Helix 103	AL4	E	275	279	Right-handed 310
Helix 104	AL5	E	282	292	Right-handed alpha
Helix 105	AL6	E	310	314	Right-handed 310
Helix 106	AL7	E	317	324	Right-handed alpha
Helix 107	AL8	E	334	340	Right-handed alpha
Helix 108	AL9	E	357	389	Right-handed alpha
Helix 109	AM1	E	395	412	Right-handed alpha
Helix 110	AM2	E	416	420	Right-handed 310
Helix 111	AM3	E	431	445	Right-handed alpha
Helix 112	AM4	E	451	455	Right-handed 310
Helix 113	AM5	E	460	471	Right-handed alpha
Helix 114	AM6	F	91	95	Right-handed 310
Helix 115	AM7	F	126	130	Right-handed 310
Helix 116	AM8	F	141	148	Right-handed alpha
Helix 117	AM9	F	165	178	Right-handed alpha
Helix 118	AN1	F	193	207	Right-handed alpha
Helix 119	AN2	F	209	211	Right-handed 310
Helix 120	AN3	F	223	246	Right-handed alpha
Helix 121	AN4	F	255	270	Right-handed alpha
Helix 122	AN5	F	275	279	Right-handed 310
Helix 123	AN6	F	282	294	Right-handed alpha
Helix 124	AN7	F	311	314	Right-handed 310
Helix 125	AN8	F	317	324	Right-handed alpha
Helix 126	AN9	F	325	327	Right-handed 310
Helix 127	AO1	F	334	340	Right-handed alpha
Helix 128	AO2	F	357	362	Right-handed alpha
Helix 129	AO3	F	362	382	Right-handed alpha
Helix 130	AO4	F	382	390	Right-handed alpha
Helix 131	AO5	F	395	412	Right-handed alpha
Helix 132	AO6	F	419	424	Right-handed alpha
Helix 133	AO7	F	431	444	Right-handed alpha
Helix 134	AO8	F	451	456	Right-handed 310
Helix 135	AO9	F	460	472	Right-handed alpha
Helix 136	AP1	G	4	61	Right-handed alpha
Helix 137	AP2	G	91	111	Right-handed alpha
Helix 138	AP3	G	121	131	Right-handed alpha
Helix 139	AP4	G	146	163	Right-handed alpha
Helix 140	AP5	G	227	303	Right-handed alpha
Helix 141	AP6	H	88	90	Right-handed 310
Helix 142	AP7	H	91	99	Right-handed alpha
Helix 143	AP8	H	103	118	Right-handed alpha
Helix 144	AP9	L	4	46	Right-handed alpha
Helix 145	AQ1	L	49	80	Right-handed alpha
Helix 146	AQ2	M	4	46	Right-handed alpha
Helix 147	AQ3	M	49	81	Right-handed alpha
Helix 148	AQ4	N	4	46	Right-handed alpha
Helix 149	AQ5	N	49	80	Right-handed alpha
Helix 150	AQ6	O	4	46	Right-handed alpha
Helix 151	AQ7	O	49	80	Right-handed alpha
Helix 152	AQ8	P	4	46	Right-handed alpha
Helix 153	AQ9	P	49	81	Right-handed alpha
Helix 154	AR1	Q	4	46	Right-handed alpha
Helix 155	AR2	Q	49	80	Right-handed alpha
Helix 156	AR3	R	4	46	Right-handed alpha
Helix 157	AR4	R	49	79	Right-handed alpha
Helix 158	AR5	S	4	46	Right-handed alpha
Helix 159	AR6	S	49	81	Right-handed alpha
Helix 160	AR7	T	4	46	Right-handed alpha
Helix 161	AR8	T	49	80	Right-handed alpha
Helix 162	AR9	a	28	52	Right-handed alpha
Helix 163	AS1	a	60	81	Right-handed alpha
Helix 164	AS2	a	88	106	Right-handed alpha
Helix 165	AS3	a	107	109	Right-handed 310
Helix 166	AS4	a	126	129	Right-handed 310
Helix 167	AS5	a	130	154	Right-handed alpha
Helix 168	AS6	a	156	165	Right-handed alpha
Helix 169	AS7	a	167	169	Right-handed 310
Helix 170	AS8	a	170	205	Right-handed alpha
Helix 171	AS9	a	207	245	Right-handed alpha
Helix 172	AT1	b	29	48	Right-handed alpha
Helix 173	AT2	b	49	161	Right-handed alpha
Helix 174	AT3	d	2	22	Right-handed alpha
Helix 175	AT4	d	22	137	Right-handed alpha
Helix 176	AT5	d	139	157	Right-handed alpha
Helix 177	AT6	d	173	192	Right-handed alpha
Helix 178	AT7	d	195	216	Right-handed alpha
Helix 179	AT8	d	216	225	Right-handed alpha
Helix 180	AT9	d	230	242	Right-handed alpha
Helix 181	AU1	d	246	259	Right-handed alpha
Helix 182	AU2	d	263	287	Right-handed alpha
Helix 183	AU3	d	288	306	Right-handed alpha
Helix 184	AU4	d	306	315	Right-handed alpha
Helix 185	AU5	d	319	331	Right-handed alpha
Helix 186	AU6	d	338	351	Right-handed alpha
Helix 187	AU7	d	356	372	Right-handed alpha
Helix 188	AU8	d	386	402	Right-handed alpha
Helix 189	AU9	d	413	416	Right-handed 310
Helix 190	AV1	d	431	443	Right-handed alpha

There are 28 sheets in PDB entry 7NJM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	90	93	anti-parallel
Strand 3	A	55	58	anti-parallel
Strand 4	A	62	69	anti-parallel
Strand 5	A	74	78	anti-parallel
Strand 6	A	41	45	anti-parallel
Strand 7	A	33	38	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	128	131	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	168	172	parallel
Strand 3	A	329	331	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	237	first strand
Strand 2	A	203	209	parallel
Strand 3	A	266	272	parallel
Strand 4	A	323	328	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	90	93	anti-parallel
Strand 3	B	55	58	anti-parallel
Strand 4	B	62	69	anti-parallel
Strand 5	B	73	79	anti-parallel
Strand 6	B	41	45	anti-parallel
Strand 7	B	33	38	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	128	131	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	355	first strand
Strand 2	B	169	172	parallel
Strand 3	B	329	331	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	237	first strand
Strand 2	B	203	209	parallel
Strand 3	B	266	272	parallel
Strand 4	B	323	328	parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	90	93	anti-parallel
Strand 3	C	55	58	anti-parallel
Strand 4	C	62	69	anti-parallel
Strand 5	C	74	79	anti-parallel
Strand 6	C	41	46	anti-parallel
Strand 7	C	32	37	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	128	131	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	355	first strand
Strand 2	C	169	172	parallel
Strand 3	C	329	331	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	237	first strand
Strand 2	C	202	209	parallel
Strand 3	C	266	272	parallel
Strand 4	C	323	328	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	16	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	61	66	anti-parallel
Strand 4	D	47	56	anti-parallel
Strand 5	D	35	40	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	117	119	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	329	332	first strand
Strand 2	D	155	160	parallel
Strand 3	D	302	309	parallel
Strand 4	D	249	254	parallel
Strand 5	D	184	190	parallel
Strand 6	D	213	218	parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	16	first strand
Strand 2	E	19	23	anti-parallel
Strand 3	E	61	66	anti-parallel
Strand 4	E	47	56	anti-parallel
Strand 5	E	35	40	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	117	119	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	332	first strand
Strand 2	E	155	159	parallel
Strand 3	E	302	307	parallel
Strand 4	E	249	254	parallel
Strand 5	E	184	192	parallel
Strand 6	E	213	219	parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	16	first strand
Strand 2	F	19	23	anti-parallel
Strand 3	F	61	66	anti-parallel
Strand 4	F	47	56	anti-parallel
Strand 5	F	35	40	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	90	first strand
Strand 2	F	116	119	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	329	332	first strand
Strand 2	F	155	160	parallel
Strand 3	F	302	309	parallel
Strand 4	F	249	254	parallel
Strand 5	F	184	190	parallel
Strand 6	F	213	218	parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	196	204	first strand
Strand 2	G	183	190	anti-parallel
Strand 3	G	76	82	parallel
Strand 4	G	113	119	parallel
Strand 5	G	136	138	parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	44	first strand
Strand 2	H	69	72	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	4	10	parallel
Strand 5	H	14	20	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	31	34	first strand
Strand 2	H	22	26	anti-parallel
Strand 3	H	50	54	anti-parallel
Strand 4	H	61	66	anti-parallel
Strand 5	H	83	86	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	20	22	first strand
Strand 2	a	25	27	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	112	114	first strand
Strand 2	a	120	122	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	375	381	first strand
Strand 2	d	405	411	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	420	423	first strand
Strand 2	d	426	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NJM