Analysis of interatomic Contacts of Structural Units in PDB entry:
7NKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NKZ entry

There are 2 chains in PDB entry 7NKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1ARG 343
A
 MET 1PRO 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 7NKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1 37Right-handed alpha
Helix 2
AA2
B
45 54Right-handed alpha
Helix 3
AA3
B
57 76Right-handed alpha
Helix 4
AA4
B
76 87Right-handed alpha
Helix 5
AA5
B
87 108Right-handed alpha
Helix 6
AA6
B
113 145Right-handed alpha
Helix 7
AA7
B
163 189Right-handed alpha
Helix 8
AA8
B
191 204Right-handed alpha
Helix 9
AA9
B
205 223Right-handed alpha
Helix 10
AB1
B
227 248Right-handed alpha
Helix 11
AB2
B
252 274Right-handed alpha
Helix 12
AB3
B
284 288Right-handed 310
Helix 13
AB4
B
297 326Right-handed alpha
Helix 14
AB5
A
2 43Right-handed alpha
Helix 15
AB6
A
44 80Right-handed alpha
Helix 16
AB7
A
80 102Right-handed alpha
Helix 17
AB8
A
102 116Right-handed alpha
Helix 18
AB9
A
121 152Right-handed alpha
Helix 19
AC1
A
169 175Right-handed alpha
Helix 20
AC2
A
176 211Right-handed alpha
Helix 21
AC3
A
218 255Right-handed alpha
Helix 22
AC4
A
255 262Right-handed alpha
Helix 23
AC5
A
297 303Right-handed alpha
Helix 24
AC6
A
313 326Right-handed alpha
Helix 25
AC7
A
333 347Right-handed alpha
Helix 26
AC8
A
348 362Right-handed alpha
Helix 27
AC9
A
363 366Right-handed 310
Helix 28
AD1
A
370 381Right-handed alpha
Helix 29
AD2
A
381 399Right-handed alpha
Helix 30
AD3
A
418 422Right-handed alpha
Helix 31
AD4
A
426 459Right-handed alpha
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There are 6 sheets in PDB entry 7NKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
341 342parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 279first strand
Strand 2
B
289 290anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
166 167anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
310 311anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
289 291anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 404first strand
Strand 2
A
416 417anti-parallel
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