Analysis of interatomic Contacts of Structural Units in PDB entry:
7NL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NL9 entry

There are 15 chains in PDB entry 7NL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 538PRO 545
G
 ASN 52PRO 237
H
 ASP 3ILE 120
L
 LEU 3GLN 86
M
 LEU 3GLN 86
N
 LEU 3GLN 86
O
 LEU 3GLN 86
P
 LEU 3GLN 86
Q
 LEU 3GLN 86
R
 LEU 3GLN 86
S
 LEU 3GLN 86
T
 LEU 3GLN 86
a
 ALA 10LEU 247
b
 SER 22ASP 84
d
 MET 1ALA 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7NL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
G
53 61Right-handed alpha
Helix 2
AA2
G
227 236Right-handed alpha
Helix 3
AA3
H
91 96Right-handed alpha
Helix 4
AA4
H
105 118Right-handed alpha
Helix 5
AA5
L
4 46Right-handed alpha
Helix 6
AA6
L
49 80Right-handed alpha
Helix 7
AA7
M
4 46Right-handed alpha
Helix 8
AA8
M
49 80Right-handed alpha
Helix 9
AA9
N
4 46Right-handed alpha
Helix 10
AB1
N
49 80Right-handed alpha
Helix 11
AB2
O
4 46Right-handed alpha
Helix 12
AB3
O
49 80Right-handed alpha
Helix 13
AB4
P
4 46Right-handed alpha
Helix 14
AB5
P
49 81Right-handed alpha
Helix 15
AB6
Q
4 46Right-handed alpha
Helix 16
AB7
Q
47 50Right-handed 310
Helix 17
AB8
Q
51 52Right-handed 310
Helix 18
AB9
Q
53 80Right-handed alpha
Helix 19
AC1
R
4 46Right-handed alpha
Helix 20
AC2
R
49 81Right-handed alpha
Helix 21
AC3
S
4 46Right-handed alpha
Helix 22
AC4
S
49 81Right-handed alpha
Helix 23
AC5
T
4 46Right-handed alpha
Helix 24
AC6
T
49 81Right-handed alpha
Helix 25
AC7
a
28 51Right-handed alpha
Helix 26
AC8
a
60 81Right-handed alpha
Helix 27
AC9
a
88 106Right-handed alpha
Helix 28
AD1
a
107 109Right-handed 310
Helix 29
AD2
a
126 129Right-handed 310
Helix 30
AD3
a
130 154Right-handed alpha
Helix 31
AD4
a
156 165Right-handed alpha
Helix 32
AD5
a
167 169Right-handed 310
Helix 33
AD6
a
170 204Right-handed alpha
Helix 34
AD7
a
207 245Right-handed alpha
Helix 35
AD8
b
29 49Right-handed alpha
Helix 36
AD9
b
49 84Right-handed alpha
Helix 37
AE1
d
2 22Right-handed alpha
Helix 38
AE2
d
22 61Right-handed alpha
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There are 5 sheets in PDB entry 7NL9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
539 540first strand
Strand 2
G
209 210parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
223 224first strand
Strand 2
H
41 44parallel
Strand 3
H
69 72anti-parallel
Strand 4
H
76 79anti-parallel
Strand 5
H
4 8parallel
Strand 6
H
17 20anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
31 34first strand
Strand 2
H
22 26anti-parallel
Strand 3
H
50 54anti-parallel
Strand 4
H
61 64anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
20 22first strand
Strand 2
a
25 27anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
112 114first strand
Strand 2
a
120 122anti-parallel
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