Analysis of interatomic Contacts of Structural Units in PDB entry:
7NLL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NLL entry

There are 4 chains in PDB entry 7NLL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 333	LYS 528
D	THR 333	PRO 527
A	GLN 1	GLY 133
C	VAL 2	GLY 133

There are 16 helices in PDB entry 7NLL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	337	343	Right-handed alpha
Helix 2	AA2	B	365	371	Right-handed alpha
Helix 3	AA3	B	383	388	Right-handed alpha
Helix 4	AA4	B	404	410	Right-handed alpha
Helix 5	AA5	B	416	422	Right-handed alpha
Helix 6	AA6	B	438	443	Right-handed alpha
Helix 7	AA7	D	337	343	Right-handed alpha
Helix 8	AA8	D	365	371	Right-handed alpha
Helix 9	AA9	D	383	388	Right-handed alpha
Helix 10	AB1	D	404	410	Right-handed alpha
Helix 11	AB2	D	416	422	Right-handed alpha
Helix 12	AB3	D	438	443	Right-handed alpha
Helix 13	AB4	A	87	91	Right-handed 310
Helix 14	AB5	A	114	118	Right-handed 310
Helix 15	AB6	C	87	91	Right-handed 310
Helix 16	AB7	C	114	118	Right-handed 310

There are 10 sheets in PDB entry 7NLL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel
Strand 6	C	107	111	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	394	403	anti-parallel
Strand 3	D	507	516	anti-parallel
Strand 4	D	431	437	anti-parallel
Strand 5	D	376	380	anti-parallel
Strand 6	A	107	111	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	488	489	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	125	129	parallel
Strand 3	A	92	97	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	125	129	parallel
Strand 3	C	92	97	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NLL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NLL