Analysis of interatomic Contacts of Structural Units in PDB entry:
7NLN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NLN entry

There are 2 chains in PDB entry 7NLN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5GLY 294
B
 ALA 6GLY 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7NLN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
19 27Right-handed alpha
Helix 3
AA3
A
36 41Right-handed 310
Helix 4
AA4
A
42 58Right-handed alpha
Helix 5
AA5
A
69 81Right-handed alpha
Helix 6
AA6
A
94 108Right-handed alpha
Helix 7
AA7
A
108 119Right-handed alpha
Helix 8
AA8
A
130 133Right-handed 310
Helix 9
AA9
A
161 171Right-handed alpha
Helix 10
AB1
A
192 204Right-handed alpha
Helix 11
AB2
A
224 226Right-handed 310
Helix 12
AB3
A
234 241Right-handed alpha
Helix 13
AB4
A
242 244Right-handed 310
Helix 14
AB5
A
248 261Right-handed alpha
Helix 15
AB6
A
275 283Right-handed alpha
Helix 16
AB7
B
8 19Right-handed alpha
Helix 17
AB8
B
19 27Right-handed alpha
Helix 18
AB9
B
37 42Right-handed alpha
Helix 19
AC1
B
42 58Right-handed alpha
Helix 20
AC2
B
69 80Right-handed alpha
Helix 21
AC3
B
94 108Right-handed alpha
Helix 22
AC4
B
108 119Right-handed alpha
Helix 23
AC5
B
130 133Right-handed 310
Helix 24
AC6
B
161 171Right-handed alpha
Helix 25
AC7
B
192 205Right-handed alpha
Helix 26
AC8
B
224 226Right-handed 310
Helix 27
AC9
B
234 241Right-handed alpha
Helix 28
AD1
B
242 244Right-handed 310
Helix 29
AD2
B
248 261Right-handed alpha
Helix 30
AD3
B
275 283Right-handed alpha
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There are 9 sheets in PDB entry 7NLN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
174 178parallel
Strand 3
A
62 67parallel
Strand 4
A
30 35parallel
Strand 5
A
208 213parallel
Strand 6
A
265 270parallel
Strand 7
A
289 292anti-parallel
Strand 8
A
231 233parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
154 160anti-parallel
Strand 3
A
188 191parallel
Strand 4
A
180 182anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
147 149anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
228 229anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
174 178parallel
Strand 3
B
62 67parallel
Strand 4
B
30 35parallel
Strand 5
B
208 213parallel
Strand 6
B
265 270parallel
Strand 7
B
289 292anti-parallel
Strand 8
B
231 233parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
90 91anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
154 160anti-parallel
Strand 3
B
188 191parallel
Strand 4
B
180 182anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
147 149anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
228 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il