Analysis of interatomic Contacts of Structural Units in PDB entry:
7NM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NM6 entry

There is 1 chain in PDB entry 7NM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 0HIS 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 7NM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 31Right-handed 310
Helix 2
AA2
A
32 38Right-handed alpha
Helix 3
AA3
A
51 57Right-handed alpha
Helix 4
AA4
A
209 212Right-handed 310
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There are 3 sheets in PDB entry 7NM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
215 224anti-parallel
Strand 5
A
97 98anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
215 224anti-parallel
Strand 5
A
122 130anti-parallel
Strand 6
A
135 147anti-parallel
Strand 7
A
150 161anti-parallel
Strand 8
A
169 176anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
233 245anti-parallel
Strand 4
A
105 112anti-parallel
Strand 5
A
182 189anti-parallel
Strand 6
A
192 197anti-parallel
Strand 7
A
200 207anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il