Analysis of interatomic Contacts of Structural Units in PDB entry:
7NMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NMK entry

There is 1 chain in PDB entry 7NMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5GLY 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7NMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
36 45Right-handed alpha
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
79 93Right-handed alpha
Helix 5
AA5
A
123 127Right-handed 310
Helix 6
AA6
A
128 130Right-handed 310
Helix 7
AA7
A
131 142Right-handed alpha
Helix 8
AA8
A
168 178Right-handed alpha
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There are 2 sheets in PDB entry 7NMK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
73 77parallel
Strand 3
A
52 55parallel
Strand 4
A
115 121parallel
Strand 5
A
143 154parallel
Strand 6
A
215 225anti-parallel
Strand 7
A
181 192anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 102first strand
Strand 2
A
73 77parallel
Strand 3
A
52 55parallel
Strand 4
A
115 121parallel
Strand 5
A
143 154parallel
Strand 6
A
215 225anti-parallel
Strand 7
A
208 209anti-parallel
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