Analysis of interatomic Contacts of Structural Units in PDB entry:
7NMN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NMN entry

There are 4 chains in PDB entry 7NMN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 216	THR 706
B	GLN 216	THR 706
C	GLN 216	THR 706
D	GLN 216	THR 706

There are 84 helices in PDB entry 7NMN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	219	223	Right-handed 310
Helix 2	AA2	A	229	236	Right-handed alpha
Helix 3	AA3	A	237	252	Right-handed alpha
Helix 4	AA4	A	260	287	Right-handed alpha
Helix 5	AA5	A	292	314	Right-handed alpha
Helix 6	AA6	A	330	351	Right-handed alpha
Helix 7	AA7	A	376	388	Right-handed alpha
Helix 8	AA8	A	391	407	Right-handed alpha
Helix 9	AA9	A	411	444	Right-handed alpha
Helix 10	AB1	A	450	455	Right-handed alpha
Helix 11	AB2	A	461	478	Right-handed alpha
Helix 12	AB3	A	489	520	Right-handed alpha
Helix 13	AB4	A	522	543	Right-handed alpha
Helix 14	AB5	A	545	558	Right-handed alpha
Helix 15	AB6	A	566	574	Right-handed alpha
Helix 16	AB7	A	575	592	Right-handed alpha
Helix 17	AB8	A	601	609	Right-handed alpha
Helix 18	AB9	A	610	612	Right-handed 310
Helix 19	AC1	A	660	665	Right-handed 310
Helix 20	AC2	A	687	697	Right-handed alpha
Helix 21	AC3	A	697	706	Right-handed alpha
Helix 22	AC4	B	219	223	Right-handed 310
Helix 23	AC5	B	229	236	Right-handed alpha
Helix 24	AC6	B	237	252	Right-handed alpha
Helix 25	AC7	B	260	287	Right-handed alpha
Helix 26	AC8	B	292	314	Right-handed alpha
Helix 27	AC9	B	330	351	Right-handed alpha
Helix 28	AD1	B	376	388	Right-handed alpha
Helix 29	AD2	B	391	407	Right-handed alpha
Helix 30	AD3	B	411	444	Right-handed alpha
Helix 31	AD4	B	450	455	Right-handed alpha
Helix 32	AD5	B	461	478	Right-handed alpha
Helix 33	AD6	B	489	520	Right-handed alpha
Helix 34	AD7	B	522	543	Right-handed alpha
Helix 35	AD8	B	545	558	Right-handed alpha
Helix 36	AD9	B	566	574	Right-handed alpha
Helix 37	AE1	B	575	592	Right-handed alpha
Helix 38	AE2	B	601	609	Right-handed alpha
Helix 39	AE3	B	610	612	Right-handed 310
Helix 40	AE4	B	660	665	Right-handed 310
Helix 41	AE5	B	687	697	Right-handed alpha
Helix 42	AE6	B	697	706	Right-handed alpha
Helix 43	AE7	C	219	223	Right-handed 310
Helix 44	AE8	C	229	236	Right-handed alpha
Helix 45	AE9	C	237	252	Right-handed alpha
Helix 46	AF1	C	260	287	Right-handed alpha
Helix 47	AF2	C	292	314	Right-handed alpha
Helix 48	AF3	C	330	351	Right-handed alpha
Helix 49	AF4	C	376	388	Right-handed alpha
Helix 50	AF5	C	391	407	Right-handed alpha
Helix 51	AF6	C	411	444	Right-handed alpha
Helix 52	AF7	C	450	455	Right-handed alpha
Helix 53	AF8	C	461	478	Right-handed alpha
Helix 54	AF9	C	489	520	Right-handed alpha
Helix 55	AG1	C	522	543	Right-handed alpha
Helix 56	AG2	C	545	558	Right-handed alpha
Helix 57	AG3	C	566	574	Right-handed alpha
Helix 58	AG4	C	575	592	Right-handed alpha
Helix 59	AG5	C	601	609	Right-handed alpha
Helix 60	AG6	C	610	612	Right-handed 310
Helix 61	AG7	C	660	665	Right-handed 310
Helix 62	AG8	C	687	697	Right-handed alpha
Helix 63	AG9	C	697	706	Right-handed alpha
Helix 64	AH1	D	219	223	Right-handed 310
Helix 65	AH2	D	229	236	Right-handed alpha
Helix 66	AH3	D	237	252	Right-handed alpha
Helix 67	AH4	D	260	287	Right-handed alpha
Helix 68	AH5	D	292	314	Right-handed alpha
Helix 69	AH6	D	330	351	Right-handed alpha
Helix 70	AH7	D	376	388	Right-handed alpha
Helix 71	AH8	D	391	407	Right-handed alpha
Helix 72	AH9	D	411	444	Right-handed alpha
Helix 73	AI1	D	450	455	Right-handed alpha
Helix 74	AI2	D	461	478	Right-handed alpha
Helix 75	AI3	D	489	520	Right-handed alpha
Helix 76	AI4	D	522	543	Right-handed alpha
Helix 77	AI5	D	545	558	Right-handed alpha
Helix 78	AI6	D	566	574	Right-handed alpha
Helix 79	AI7	D	575	592	Right-handed alpha
Helix 80	AI8	D	601	609	Right-handed alpha
Helix 81	AI9	D	610	612	Right-handed 310
Helix 82	AJ1	D	660	665	Right-handed 310
Helix 83	AJ2	D	687	697	Right-handed alpha
Helix 84	AJ3	D	697	706	Right-handed alpha

There are 8 sheets in PDB entry 7NMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	617	first strand
Strand 2	A	680	686	anti-parallel
Strand 3	A	632	636	anti-parallel
Strand 4	A	658	659	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	654	first strand
Strand 2	A	640	644	anti-parallel
Strand 3	A	673	676	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	617	first strand
Strand 2	B	680	686	anti-parallel
Strand 3	B	632	636	anti-parallel
Strand 4	B	658	659	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	654	first strand
Strand 2	B	640	644	anti-parallel
Strand 3	B	673	676	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	617	first strand
Strand 2	C	680	686	anti-parallel
Strand 3	C	632	636	anti-parallel
Strand 4	C	658	659	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	654	first strand
Strand 2	C	640	644	anti-parallel
Strand 3	C	673	676	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	613	617	first strand
Strand 2	D	680	686	anti-parallel
Strand 3	D	632	636	anti-parallel
Strand 4	D	658	659	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	651	654	first strand
Strand 2	D	640	644	anti-parallel
Strand 3	D	673	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NMN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NMN