Analysis of interatomic Contacts of Structural Units in PDB entry:
7NNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NNL entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 7NNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 557
C
 MET 1GLU 190
D
 MET 1GLU 27
B
 MET 1GLU 161
B
 ALA 163VAL 682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 7NNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 32Right-handed alpha
Helix 2
AA2
A
41 51Right-handed alpha
Helix 3
AA3
A
58 83Right-handed alpha
Helix 4
AA4
A
84 87Right-handed 310
Helix 5
AA5
A
98 111Right-handed alpha
Helix 6
AA6
A
125 131Right-handed alpha
Helix 7
AA7
A
134 157Right-handed alpha
Helix 8
AA8
A
165 177Right-handed alpha
Helix 9
AA9
A
178 193Right-handed alpha
Helix 10
AB1
A
218 229Right-handed alpha
Helix 11
AB2
A
248 274Right-handed alpha
Helix 12
AB3
A
276 305Right-handed alpha
Helix 13
AB4
A
306 313Right-handed alpha
Helix 14
AB5
A
328 342Right-handed alpha
Helix 15
AB6
A
355 368Right-handed alpha
Helix 16
AB7
A
382 399Right-handed alpha
Helix 17
AB8
A
410 438Right-handed alpha
Helix 18
AB9
A
438 443Right-handed alpha
Helix 19
AC1
A
449 465Right-handed alpha
Helix 20
AC2
A
478 495Right-handed alpha
Helix 21
AC3
A
496 508Right-handed alpha
Helix 22
AC4
A
523 549Right-handed alpha
Helix 23
AC5
A
550 557Right-handed alpha
Helix 24
AC6
C
4 21Right-handed alpha
Helix 25
AC7
C
21 34Right-handed alpha
Helix 26
AC8
C
34 39Right-handed alpha
Helix 27
AC9
C
91 109Right-handed alpha
Helix 28
AD1
C
133 139Right-handed alpha
Helix 29
AD2
C
140 149Right-handed alpha
Helix 30
AD3
C
151 162Right-handed alpha
Helix 31
AD4
C
168 172Right-handed 310
Helix 32
AD5
C
178 190Right-handed alpha
Helix 33
AD6
D
2 25Right-handed alpha
Helix 34
AD7
B
14 24Right-handed alpha
Helix 35
AD8
B
29 32Right-handed 310
Helix 36
AD9
B
33 56Right-handed alpha
Helix 37
AE1
B
61 99Right-handed alpha
Helix 38
AE2
B
122 126Right-handed 310
Helix 39
AE3
B
155 160Right-handed alpha
Helix 40
AE4
B
198 208Right-handed alpha
Helix 41
AE5
B
215 238Right-handed alpha
Helix 42
AE6
B
238 246Right-handed alpha
Helix 43
AE7
B
251 263Right-handed alpha
Helix 44
AE8
B
264 285Right-handed alpha
Helix 45
AE9
B
291 297Right-handed alpha
Helix 46
AF1
B
329 334Right-handed alpha
Helix 47
AF2
B
336 342Right-handed alpha
Helix 48
AF3
B
346 356Right-handed alpha
Helix 49
AF4
B
399 405Right-handed alpha
Helix 50
AF5
B
413 415Right-handed 310
Helix 51
AF6
B
416 427Right-handed alpha
Helix 52
AF7
B
453 463Right-handed alpha
Helix 53
AF8
B
474 486Right-handed alpha
Helix 54
AF9
B
495 510Right-handed alpha
Helix 55
AG1
B
519 521Right-handed 310
Helix 56
AG2
B
522 529Right-handed alpha
Helix 57
AG3
B
539 546Right-handed alpha
Helix 58
AG4
B
557 595Right-handed alpha
Helix 59
AG5
B
599 606Right-handed 310
Helix 60
AG6
B
612 631Right-handed alpha
Helix 61
AG7
B
631 638Right-handed alpha
Helix 62
AG8
B
645 680Right-handed alpha
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There are 9 sheets in PDB entry 7NNL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
211 214anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 404first strand
Strand 2
A
407 408anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 45first strand
Strand 2
C
48 52anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
175 177anti-parallel
Strand 3
C
163 164anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
144 148anti-parallel
Strand 4
B
175 176anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
B
151 154anti-parallel
Strand 3
B
181 182anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
548 550anti-parallel
Strand 3
B
531 534parallel
Strand 4
B
512 517parallel
Strand 5
B
301 306parallel
Strand 6
B
466 470parallel
Strand 7
B
489 491parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
386 387anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 396first strand
Strand 2
B
431 435anti-parallel
Strand 3
B
438 443anti-parallel
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