Analysis of interatomic Contacts of Structural Units in PDB entry:
7NP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NP3 entry

There are 4 chains in PDB entry 7NP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 217	THR 706
B	ARG 217	THR 706
C	ARG 217	THR 706
D	ARG 217	THR 706

There are111 helices in PDB entry 7NP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	217	222	Right-handed 310
Helix 2	AA2	A	228	236	Right-handed alpha
Helix 3	AA3	A	237	250	Right-handed alpha
Helix 4	AA4	A	260	287	Right-handed alpha
Helix 5	AA5	A	296	316	Right-handed alpha
Helix 6	AA6	A	330	342	Right-handed alpha
Helix 7	AA7	A	342	349	Right-handed alpha
Helix 8	AA8	A	352	365	Right-handed alpha
Helix 9	AA9	A	366	369	Right-handed 310
Helix 10	AB1	A	372	385	Right-handed alpha
Helix 11	AB2	A	386	390	Right-handed 310
Helix 12	AB3	A	391	405	Right-handed alpha
Helix 13	AB4	A	406	411	Right-handed alpha
Helix 14	AB5	A	414	444	Right-handed alpha
Helix 15	AB6	A	450	455	Right-handed alpha
Helix 16	AB7	A	461	479	Right-handed alpha
Helix 17	AB8	A	489	520	Right-handed alpha
Helix 18	AB9	A	522	542	Right-handed alpha
Helix 19	AC1	A	547	561	Right-handed alpha
Helix 20	AC2	A	568	573	Right-handed alpha
Helix 21	AC3	A	575	594	Right-handed alpha
Helix 22	AC4	A	594	599	Right-handed alpha
Helix 23	AC5	A	601	609	Right-handed alpha
Helix 24	AC6	A	610	612	Right-handed 310
Helix 25	AC7	A	660	664	Right-handed 310
Helix 26	AC8	A	687	697	Right-handed alpha
Helix 27	AC9	A	697	704	Right-handed alpha
Helix 28	AD1	A	705	706	Right-handed 310
Helix 29	AD2	B	217	222	Right-handed 310
Helix 30	AD3	B	228	236	Right-handed alpha
Helix 31	AD4	B	237	250	Right-handed alpha
Helix 32	AD5	B	260	287	Right-handed alpha
Helix 33	AD6	B	296	316	Right-handed alpha
Helix 34	AD7	B	330	342	Right-handed alpha
Helix 35	AD8	B	342	349	Right-handed alpha
Helix 36	AD9	B	352	365	Right-handed alpha
Helix 37	AE1	B	366	369	Right-handed 310
Helix 38	AE2	B	372	385	Right-handed alpha
Helix 39	AE3	B	386	390	Right-handed 310
Helix 40	AE4	B	391	405	Right-handed alpha
Helix 41	AE5	B	406	411	Right-handed alpha
Helix 42	AE6	B	414	444	Right-handed alpha
Helix 43	AE7	B	450	455	Right-handed alpha
Helix 44	AE8	B	461	479	Right-handed alpha
Helix 45	AE9	B	489	520	Right-handed alpha
Helix 46	AF1	B	522	542	Right-handed alpha
Helix 47	AF2	B	547	561	Right-handed alpha
Helix 48	AF3	B	568	573	Right-handed alpha
Helix 49	AF4	B	575	594	Right-handed alpha
Helix 50	AF5	B	594	599	Right-handed alpha
Helix 51	AF6	B	601	609	Right-handed alpha
Helix 52	AF7	B	610	612	Right-handed 310
Helix 53	AF8	B	660	664	Right-handed 310
Helix 54	AF9	B	687	697	Right-handed alpha
Helix 55	AG1	B	697	704	Right-handed alpha
Helix 56	AG2	B	705	706	Right-handed 310
Helix 57	AG3	C	217	222	Right-handed 310
Helix 58	AG4	C	228	236	Right-handed alpha
Helix 59	AG5	C	237	250	Right-handed alpha
Helix 60	AG6	C	260	287	Right-handed alpha
Helix 61	AG7	C	296	316	Right-handed alpha
Helix 62	AG8	C	330	342	Right-handed alpha
Helix 63	AG9	C	342	349	Right-handed alpha
Helix 64	AH1	C	352	365	Right-handed alpha
Helix 65	AH2	C	366	369	Right-handed 310
Helix 66	AH3	C	372	385	Right-handed alpha
Helix 67	AH4	C	386	390	Right-handed 310
Helix 68	AH5	C	391	405	Right-handed alpha
Helix 69	AH6	C	406	411	Right-handed alpha
Helix 70	AH7	C	414	444	Right-handed alpha
Helix 71	AH8	C	450	455	Right-handed alpha
Helix 72	AH9	C	461	479	Right-handed alpha
Helix 73	AI1	C	489	520	Right-handed alpha
Helix 74	AI2	C	522	542	Right-handed alpha
Helix 75	AI3	C	547	561	Right-handed alpha
Helix 76	AI4	C	568	573	Right-handed alpha
Helix 77	AI5	C	575	594	Right-handed alpha
Helix 78	AI6	C	594	599	Right-handed alpha
Helix 79	AI7	C	601	609	Right-handed alpha
Helix 80	AI8	C	610	612	Right-handed 310
Helix 81	AI9	C	660	664	Right-handed 310
Helix 82	AJ1	C	687	697	Right-handed alpha
Helix 83	AJ2	C	697	704	Right-handed alpha
Helix 84	AJ3	C	705	706	Right-handed 310
Helix 85	AJ4	D	217	222	Right-handed 310
Helix 86	AJ5	D	228	236	Right-handed alpha
Helix 87	AJ6	D	237	250	Right-handed alpha
Helix 88	AJ7	D	260	287	Right-handed alpha
Helix 89	AJ8	D	296	316	Right-handed alpha
Helix 90	AJ9	D	330	342	Right-handed alpha
Helix 91	AK1	D	342	349	Right-handed alpha
Helix 92	AK2	D	352	365	Right-handed alpha
Helix 93	AK3	D	366	369	Right-handed 310
Helix 94	AK4	D	372	385	Right-handed alpha
Helix 95	AK5	D	386	390	Right-handed 310
Helix 96	AK6	D	391	405	Right-handed alpha
Helix 97	AK7	D	406	411	Right-handed alpha
Helix 98	AK8	D	414	444	Right-handed alpha
Helix 99	AK9	D	450	455	Right-handed alpha
Helix 100	AL1	D	461	479	Right-handed alpha
Helix 101	AL2	D	489	520	Right-handed alpha
Helix 102	AL3	D	522	542	Right-handed alpha
Helix 103	AL4	D	547	561	Right-handed alpha
Helix 104	AL5	D	568	573	Right-handed alpha
Helix 105	AL6	D	575	594	Right-handed alpha
Helix 106	AL7	D	594	599	Right-handed alpha
Helix 107	AL8	D	601	609	Right-handed alpha
Helix 108	AL9	D	610	612	Right-handed 310
Helix 109	AM1	D	660	664	Right-handed 310
Helix 110	AM2	D	687	697	Right-handed alpha
Helix 111	AM3	D	697	704	Right-handed alpha

There are 12 sheets in PDB entry 7NP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	324	325	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	614	first strand
Strand 2	A	683	685	anti-parallel
Strand 3	A	633	635	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	654	first strand
Strand 2	A	640	644	anti-parallel
Strand 3	A	673	676	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	321	first strand
Strand 2	B	324	325	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	613	614	first strand
Strand 2	B	683	685	anti-parallel
Strand 3	B	633	635	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	654	first strand
Strand 2	B	640	644	anti-parallel
Strand 3	B	673	676	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	321	first strand
Strand 2	C	324	325	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	614	first strand
Strand 2	C	683	685	anti-parallel
Strand 3	C	633	635	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	654	first strand
Strand 2	C	640	644	anti-parallel
Strand 3	C	673	676	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	321	first strand
Strand 2	D	324	325	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	613	614	first strand
Strand 2	D	683	685	anti-parallel
Strand 3	D	633	635	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	653	654	first strand
Strand 2	D	640	644	anti-parallel
Strand 3	D	673	676	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NP3