Analysis of interatomic Contacts of Structural Units in PDB entry:
7NP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NP8 entry

There are 3 chains in PDB entry 7NP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 619
B	MET 1	CYS 620
C	MET 1	LEU 30

There are104 helices in PDB entry 7NP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed alpha
Helix 2	AA2	A	19	24	Right-handed alpha
Helix 3	AA3	A	48	54	Right-handed alpha
Helix 4	AA4	A	60	69	Right-handed alpha
Helix 5	AA5	A	87	99	Right-handed alpha
Helix 6	AA6	A	123	130	Right-handed 310
Helix 7	AA7	A	139	149	Right-handed alpha
Helix 8	AA8	A	158	170	Right-handed alpha
Helix 9	AA9	A	170	176	Right-handed alpha
Helix 10	AB1	A	206	217	Right-handed alpha
Helix 11	AB2	A	220	222	Right-handed 310
Helix 12	AB3	A	248	250	Right-handed 310
Helix 13	AB4	A	253	258	Right-handed alpha
Helix 14	AB5	A	289	296	Right-handed 310
Helix 15	AB6	A	304	329	Right-handed alpha
Helix 16	AB7	A	335	341	Right-handed 310
Helix 17	AB8	A	359	361	Right-handed 310
Helix 18	AB9	A	365	380	Right-handed alpha
Helix 19	AC1	A	400	411	Right-handed alpha
Helix 20	AC2	A	441	453	Right-handed alpha
Helix 21	AC3	A	474	478	Right-handed 310
Helix 22	AC4	A	499	505	Right-handed alpha
Helix 23	AC5	A	528	533	Right-handed alpha
Helix 24	AC6	A	568	587	Right-handed alpha
Helix 25	AC7	A	594	603	Right-handed alpha
Helix 26	AC8	A	603	619	Right-handed alpha
Helix 27	AC9	B	6	12	Right-handed alpha
Helix 28	AD1	B	19	24	Right-handed alpha
Helix 29	AD2	B	48	54	Right-handed alpha
Helix 30	AD3	B	60	69	Right-handed alpha
Helix 31	AD4	B	87	99	Right-handed alpha
Helix 32	AD5	B	123	130	Right-handed 310
Helix 33	AD6	B	140	149	Right-handed alpha
Helix 34	AD7	B	158	170	Right-handed alpha
Helix 35	AD8	B	170	176	Right-handed alpha
Helix 36	AD9	B	206	217	Right-handed alpha
Helix 37	AE1	B	220	224	Right-handed 310
Helix 38	AE2	B	248	250	Right-handed 310
Helix 39	AE3	B	253	258	Right-handed alpha
Helix 40	AE4	B	289	296	Right-handed 310
Helix 41	AE5	B	304	329	Right-handed alpha
Helix 42	AE6	B	335	341	Right-handed 310
Helix 43	AE7	B	359	361	Right-handed 310
Helix 44	AE8	B	365	380	Right-handed alpha
Helix 45	AE9	B	400	411	Right-handed alpha
Helix 46	AF1	B	441	453	Right-handed alpha
Helix 47	AF2	B	474	478	Right-handed 310
Helix 48	AF3	B	499	505	Right-handed alpha
Helix 49	AF4	B	528	533	Right-handed alpha
Helix 50	AF5	B	568	587	Right-handed alpha
Helix 51	AF6	B	594	603	Right-handed alpha
Helix 52	AF7	B	603	618	Right-handed alpha
Helix 53	AF8	C	6	12	Right-handed alpha
Helix 54	AF9	C	19	24	Right-handed alpha
Helix 55	AG1	C	48	54	Right-handed alpha
Helix 56	AG2	C	60	69	Right-handed alpha
Helix 57	AG3	C	87	99	Right-handed alpha
Helix 58	AG4	C	124	130	Right-handed 310
Helix 59	AG5	C	140	149	Right-handed alpha
Helix 60	AG6	C	158	170	Right-handed alpha
Helix 61	AG7	C	170	176	Right-handed alpha
Helix 62	AG8	C	206	217	Right-handed alpha
Helix 63	AG9	C	220	222	Right-handed 310
Helix 64	AH1	C	248	250	Right-handed 310
Helix 65	AH2	C	253	258	Right-handed alpha
Helix 66	AH3	C	289	295	Right-handed 310
Helix 67	AH4	C	304	329	Right-handed alpha
Helix 68	AH5	C	335	341	Right-handed 310
Helix 69	AH6	C	359	361	Right-handed 310
Helix 70	AH7	C	365	380	Right-handed alpha
Helix 71	AH8	C	400	411	Right-handed alpha
Helix 72	AH9	C	441	453	Right-handed alpha
Helix 73	AI1	C	474	478	Right-handed 310
Helix 74	AI2	C	499	505	Right-handed alpha
Helix 75	AI3	C	528	533	Right-handed alpha
Helix 76	AI4	C	568	587	Right-handed alpha
Helix 77	AI5	C	594	603	Right-handed alpha
Helix 78	AI6	C	603	618	Right-handed alpha
Helix 79	AI7	D	6	12	Right-handed alpha
Helix 80	AI8	D	19	24	Right-handed alpha
Helix 81	AI9	D	48	54	Right-handed alpha
Helix 82	AJ1	D	60	69	Right-handed alpha
Helix 83	AJ2	D	87	99	Right-handed alpha
Helix 84	AJ3	D	126	130	Right-handed 310
Helix 85	AJ4	D	140	149	Right-handed alpha
Helix 86	AJ5	D	158	170	Right-handed alpha
Helix 87	AJ6	D	170	176	Right-handed alpha
Helix 88	AJ7	D	206	217	Right-handed alpha
Helix 89	AJ8	D	220	222	Right-handed 310
Helix 90	AJ9	D	248	250	Right-handed 310
Helix 91	AK1	D	253	258	Right-handed alpha
Helix 92	AK2	D	289	296	Right-handed 310
Helix 93	AK3	D	304	329	Right-handed alpha
Helix 94	AK4	D	335	341	Right-handed 310
Helix 95	AK5	D	359	361	Right-handed 310
Helix 96	AK6	D	365	380	Right-handed alpha
Helix 97	AK7	D	400	411	Right-handed alpha
Helix 98	AK8	D	441	453	Right-handed alpha
Helix 99	AK9	D	474	478	Right-handed 310
Helix 100	AL1	D	499	505	Right-handed alpha
Helix 101	AL2	D	528	533	Right-handed alpha
Helix 102	AL3	D	568	587	Right-handed alpha
Helix 103	AL4	D	594	603	Right-handed alpha
Helix 104	AL5	D	603	620	Right-handed alpha

There are 24 sheets in PDB entry 7NP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	36	38	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	77	first strand
Strand 2	A	281	285	anti-parallel
Strand 3	A	269	272	anti-parallel
Strand 4	A	192	199	parallel
Strand 5	A	152	157	parallel
Strand 6	A	104	111	parallel
Strand 7	A	114	120	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	230	first strand
Strand 2	A	233	238	anti-parallel
Strand 3	A	241	246	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	346	first strand
Strand 2	A	352	356	anti-parallel
Strand 3	A	391	396	anti-parallel
Strand 4	A	382	385	anti-parallel
Strand 5	B	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	391	396	anti-parallel
Strand 4	B	352	356	anti-parallel
Strand 5	B	344	346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	463	466	parallel
Strand 3	A	480	490	parallel
Strand 4	A	539	550	anti-parallel
Strand 5	A	562	567	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	513	first strand
Strand 2	A	516	519	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	36	38	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	281	285	anti-parallel
Strand 3	B	269	272	anti-parallel
Strand 4	B	192	199	parallel
Strand 5	B	152	157	parallel
Strand 6	B	104	111	parallel
Strand 7	B	114	120	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	230	first strand
Strand 2	B	233	238	anti-parallel
Strand 3	B	241	246	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	463	466	parallel
Strand 3	B	480	490	parallel
Strand 4	B	539	550	anti-parallel
Strand 5	B	562	567	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	513	first strand
Strand 2	B	516	519	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	32	first strand
Strand 2	C	36	38	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	77	first strand
Strand 2	C	281	285	anti-parallel
Strand 3	C	269	272	anti-parallel
Strand 4	C	192	199	parallel
Strand 5	C	152	157	parallel
Strand 6	C	104	111	parallel
Strand 7	C	114	120	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	230	first strand
Strand 2	C	233	238	anti-parallel
Strand 3	C	241	246	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	346	first strand
Strand 2	C	352	356	anti-parallel
Strand 3	C	391	396	anti-parallel
Strand 4	C	382	385	anti-parallel
Strand 5	D	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	391	396	anti-parallel
Strand 4	D	352	356	anti-parallel
Strand 5	D	344	346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	427	first strand
Strand 2	C	463	466	parallel
Strand 3	C	480	490	parallel
Strand 4	C	539	550	anti-parallel
Strand 5	C	562	567	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	510	513	first strand
Strand 2	C	516	519	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	32	first strand
Strand 2	D	36	38	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	77	first strand
Strand 2	D	281	285	anti-parallel
Strand 3	D	269	272	anti-parallel
Strand 4	D	192	199	parallel
Strand 5	D	152	157	parallel
Strand 6	D	104	111	parallel
Strand 7	D	114	120	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	230	first strand
Strand 2	D	233	238	anti-parallel
Strand 3	D	241	246	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	427	first strand
Strand 2	D	463	466	parallel
Strand 3	D	480	490	parallel
Strand 4	D	539	550	anti-parallel
Strand 5	D	562	567	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	510	513	first strand
Strand 2	D	516	519	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NP8