Analysis of interatomic Contacts of Structural Units in PDB entry:
7NPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NPE entry

There are 4 chains in PDB entry 7NPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLN 406
B
 LYS 4GLY 407
C
 MET 3GLN 406
D
 MET 3CYS 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 7NPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 20Right-handed alpha
Helix 2
AA2
A
25 33Right-handed alpha
Helix 3
AA3
A
43 51Right-handed alpha
Helix 4
AA4
A
54 67Right-handed alpha
Helix 5
AA5
A
83 93Right-handed alpha
Helix 6
AA6
A
103 107Right-handed 310
Helix 7
AA7
A
123 137Right-handed alpha
Helix 8
AA8
A
155 160Right-handed alpha
Helix 9
AA9
A
174 180Right-handed alpha
Helix 10
AB1
A
190 198Right-handed alpha
Helix 11
AB2
A
213 216Right-handed 310
Helix 12
AB3
A
217 225Right-handed alpha
Helix 13
AB4
A
226 231Right-handed 310
Helix 14
AB5
A
234 236Right-handed 310
Helix 15
AB6
A
237 243Right-handed alpha
Helix 16
AB7
A
243 248Right-handed alpha
Helix 17
AB8
A
263 273Right-handed alpha
Helix 18
AB9
A
283 302Right-handed alpha
Helix 19
AC1
A
325 340Right-handed alpha
Helix 20
AC2
A
351 361Right-handed alpha
Helix 21
AC3
A
368 372Right-handed 310
Helix 22
AC4
A
376 400Right-handed alpha
Helix 23
AC5
B
5 19Right-handed alpha
Helix 24
AC6
B
25 33Right-handed alpha
Helix 25
AC7
B
44 52Right-handed alpha
Helix 26
AC8
B
54 68Right-handed alpha
Helix 27
AC9
B
83 93Right-handed alpha
Helix 28
AD1
B
123 137Right-handed alpha
Helix 29
AD2
B
174 180Right-handed alpha
Helix 30
AD3
B
190 198Right-handed alpha
Helix 31
AD4
B
213 217Right-handed 310
Helix 32
AD5
B
218 230Right-handed alpha
Helix 33
AD6
B
233 236Right-handed 310
Helix 34
AD7
B
237 243Right-handed alpha
Helix 35
AD8
B
243 248Right-handed alpha
Helix 36
AD9
B
249 251Right-handed 310
Helix 37
AE1
B
263 273Right-handed alpha
Helix 38
AE2
B
283 302Right-handed alpha
Helix 39
AE3
B
325 339Right-handed alpha
Helix 40
AE4
B
351 361Right-handed alpha
Helix 41
AE5
B
375 400Right-handed alpha
Helix 42
AE6
B
400 405Right-handed alpha
Helix 43
AE7
C
4 20Right-handed alpha
Helix 44
AE8
C
25 33Right-handed alpha
Helix 45
AE9
C
43 51Right-handed alpha
Helix 46
AF1
C
54 67Right-handed alpha
Helix 47
AF2
C
83 93Right-handed alpha
Helix 48
AF3
C
123 137Right-handed alpha
Helix 49
AF4
C
155 160Right-handed alpha
Helix 50
AF5
C
174 180Right-handed alpha
Helix 51
AF6
C
190 198Right-handed alpha
Helix 52
AF7
C
213 216Right-handed 310
Helix 53
AF8
C
217 230Right-handed alpha
Helix 54
AF9
C
233 236Right-handed 310
Helix 55
AG1
C
237 243Right-handed alpha
Helix 56
AG2
C
243 248Right-handed alpha
Helix 57
AG3
C
263 273Right-handed alpha
Helix 58
AG4
C
283 303Right-handed alpha
Helix 59
AG5
C
325 340Right-handed alpha
Helix 60
AG6
C
351 361Right-handed alpha
Helix 61
AG7
C
368 372Right-handed 310
Helix 62
AG8
C
376 400Right-handed alpha
Helix 63
AG9
C
401 406Right-handed alpha
Helix 64
AH1
D
4 20Right-handed alpha
Helix 65
AH2
D
25 33Right-handed alpha
Helix 66
AH3
D
44 50Right-handed alpha
Helix 67
AH4
D
54 67Right-handed alpha
Helix 68
AH5
D
83 93Right-handed alpha
Helix 69
AH6
D
102 106Right-handed 310
Helix 70
AH7
D
123 137Right-handed alpha
Helix 71
AH8
D
175 180Right-handed alpha
Helix 72
AH9
D
190 198Right-handed alpha
Helix 73
AI1
D
213 219Right-handed 310
Helix 74
AI2
D
220 229Right-handed alpha
Helix 75
AI3
D
236 243Right-handed alpha
Helix 76
AI4
D
243 248Right-handed alpha
Helix 77
AI5
D
263 273Right-handed alpha
Helix 78
AI6
D
283 303Right-handed alpha
Helix 79
AI7
D
325 340Right-handed alpha
Helix 80
AI8
D
351 361Right-handed alpha
Helix 81
AI9
D
368 372Right-handed 310
Helix 82
AJ1
D
374 374Right-handed 310
Helix 83
AJ2
D
375 400Right-handed alpha
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There are 4 sheets in PDB entry 7NPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
207 210anti-parallel
Strand 3
A
145 149parallel
Strand 4
A
253 257parallel
Strand 5
A
111 115parallel
Strand 6
A
275 281parallel
Strand 7
A
314 319parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
207 210anti-parallel
Strand 3
B
145 149parallel
Strand 4
B
253 257parallel
Strand 5
B
111 115parallel
Strand 6
B
275 281parallel
Strand 7
B
314 319parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 201first strand
Strand 2
C
207 210anti-parallel
Strand 3
C
145 149parallel
Strand 4
C
253 257parallel
Strand 5
C
111 115parallel
Strand 6
C
275 281parallel
Strand 7
C
314 319parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
200 201first strand
Strand 2
D
207 210anti-parallel
Strand 3
D
145 148parallel
Strand 4
D
253 255parallel
Strand 5
D
111 115parallel
Strand 6
D
275 281parallel
Strand 7
D
314 319parallel
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