Analysis of interatomic Contacts of Structural Units in PDB entry:
7NPJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NPJ entry

There are 5 chains in PDB entry 7NPJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 9	PRO 352
B	ALA 9	PRO 352
C	ALA 9	PRO 352
D	ALA 9	PRO 352
E	ALA 9	GLU 74

There are119 helices in PDB entry 7NPJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	32	38	Right-handed alpha
Helix 3	AA3	A	54	58	Right-handed 310
Helix 4	AA4	A	62	66	Right-handed 310
Helix 5	AA5	A	74	79	Right-handed alpha
Helix 6	AA6	A	93	98	Right-handed alpha
Helix 7	AA7	A	118	125	Right-handed alpha
Helix 8	AA8	A	157	173	Right-handed alpha
Helix 9	AA9	A	188	192	Right-handed 310
Helix 10	AB1	A	196	199	Right-handed 310
Helix 11	AB2	A	200	205	Right-handed alpha
Helix 12	AB3	A	219	229	Right-handed alpha
Helix 13	AB4	A	261	274	Right-handed alpha
Helix 14	AB5	A	289	293	Right-handed 310
Helix 15	AB6	A	325	338	Right-handed alpha
Helix 16	AB7	B	21	31	Right-handed alpha
Helix 17	AB8	B	32	37	Right-handed alpha
Helix 18	AB9	B	54	59	Right-handed alpha
Helix 19	AC1	B	62	66	Right-handed 310
Helix 20	AC2	B	74	79	Right-handed alpha
Helix 21	AC3	B	93	98	Right-handed alpha
Helix 22	AC4	B	117	126	Right-handed alpha
Helix 23	AC5	B	142	148	Right-handed alpha
Helix 24	AC6	B	157	173	Right-handed alpha
Helix 25	AC7	B	189	192	Right-handed 310
Helix 26	AC8	B	200	205	Right-handed alpha
Helix 27	AC9	B	218	229	Right-handed alpha
Helix 28	AD1	B	261	271	Right-handed alpha
Helix 29	AD2	B	289	293	Right-handed 310
Helix 30	AD3	B	307	309	Right-handed 310
Helix 31	AD4	B	325	337	Right-handed alpha
Helix 32	AD5	C	19	31	Right-handed alpha
Helix 33	AD6	C	32	37	Right-handed alpha
Helix 34	AD7	C	54	59	Right-handed alpha
Helix 35	AD8	C	62	66	Right-handed 310
Helix 36	AD9	C	74	79	Right-handed alpha
Helix 37	AE1	C	91	98	Right-handed alpha
Helix 38	AE2	C	117	126	Right-handed alpha
Helix 39	AE3	C	157	172	Right-handed alpha
Helix 40	AE4	C	189	192	Right-handed 310
Helix 41	AE5	C	200	205	Right-handed alpha
Helix 42	AE6	C	219	229	Right-handed alpha
Helix 43	AE7	C	261	274	Right-handed alpha
Helix 44	AE8	C	289	294	Right-handed alpha
Helix 45	AE9	C	325	337	Right-handed alpha
Helix 46	AF1	D	19	31	Right-handed alpha
Helix 47	AF2	D	34	38	Right-handed 310
Helix 48	AF3	D	54	58	Right-handed 310
Helix 49	AF4	D	74	79	Right-handed alpha
Helix 50	AF5	D	91	100	Right-handed alpha
Helix 51	AF6	D	117	126	Right-handed alpha
Helix 52	AF7	D	142	148	Right-handed alpha
Helix 53	AF8	D	157	173	Right-handed alpha
Helix 54	AF9	D	196	199	Right-handed 310
Helix 55	AG1	D	200	205	Right-handed alpha
Helix 56	AG2	D	219	229	Right-handed alpha
Helix 57	AG3	D	261	273	Right-handed alpha
Helix 58	AG4	D	325	337	Right-handed alpha
Helix 59	AG5	E	19	32	Right-handed alpha
Helix 60	AG6	E	32	37	Right-handed alpha
Helix 61	AG7	E	54	58	Right-handed 310
Helix 62	AG8	E	62	66	Right-handed 310
Helix 63	AG9	E	74	79	Right-handed alpha
Helix 64	AH1	E	94	99	Right-handed alpha
Helix 65	AH2	E	117	125	Right-handed alpha
Helix 66	AH3	E	143	148	Right-handed alpha
Helix 67	AH4	E	157	166	Right-handed alpha
Helix 68	AH5	E	167	173	Right-handed alpha
Helix 69	AH6	E	196	199	Right-handed 310
Helix 70	AH7	E	200	205	Right-handed alpha
Helix 71	AH8	E	219	229	Right-handed alpha
Helix 72	AH9	E	261	274	Right-handed alpha
Helix 73	AI1	E	289	293	Right-handed 310
Helix 74	AI2	E	325	337	Right-handed alpha
Helix 75	AI3	F	19	31	Right-handed alpha
Helix 76	AI4	F	62	66	Right-handed 310
Helix 77	AI5	F	92	98	Right-handed alpha
Helix 78	AI6	F	117	126	Right-handed alpha
Helix 79	AI7	F	142	148	Right-handed alpha
Helix 80	AI8	F	157	166	Right-handed alpha
Helix 81	AI9	F	167	172	Right-handed alpha
Helix 82	AJ1	F	196	199	Right-handed 310
Helix 83	AJ2	F	200	205	Right-handed alpha
Helix 84	AJ3	F	219	227	Right-handed alpha
Helix 85	AJ4	F	261	275	Right-handed alpha
Helix 86	AJ5	F	290	294	Right-handed 310
Helix 87	AJ6	F	325	335	Right-handed alpha
Helix 88	AJ7	G	19	31	Right-handed alpha
Helix 89	AJ8	G	32	37	Right-handed alpha
Helix 90	AJ9	G	54	59	Right-handed alpha
Helix 91	AK1	G	64	68	Right-handed 310
Helix 92	AK2	G	74	79	Right-handed alpha
Helix 93	AK3	G	91	100	Right-handed alpha
Helix 94	AK4	G	117	126	Right-handed alpha
Helix 95	AK5	G	142	148	Right-handed alpha
Helix 96	AK6	G	157	166	Right-handed alpha
Helix 97	AK7	G	167	173	Right-handed alpha
Helix 98	AK8	G	188	192	Right-handed 310
Helix 99	AK9	G	200	205	Right-handed alpha
Helix 100	AL1	G	219	230	Right-handed alpha
Helix 101	AL2	G	261	274	Right-handed alpha
Helix 102	AL3	G	289	293	Right-handed 310
Helix 103	AL4	G	325	338	Right-handed alpha
Helix 104	AL5	H	19	30	Right-handed alpha
Helix 105	AL6	H	32	37	Right-handed alpha
Helix 106	AL7	H	54	58	Right-handed 310
Helix 107	AL8	H	63	68	Right-handed 310
Helix 108	AL9	H	74	79	Right-handed alpha
Helix 109	AM1	H	95	99	Right-handed 310
Helix 110	AM2	H	120	125	Right-handed alpha
Helix 111	AM3	H	142	147	Right-handed alpha
Helix 112	AM4	H	157	173	Right-handed alpha
Helix 113	AM5	H	189	192	Right-handed 310
Helix 114	AM6	H	196	199	Right-handed 310
Helix 115	AM7	H	200	205	Right-handed alpha
Helix 116	AM8	H	219	227	Right-handed alpha
Helix 117	AM9	H	261	274	Right-handed alpha
Helix 118	AN1	H	289	294	Right-handed 310
Helix 119	AN2	H	325	338	Right-handed alpha

There are 19 sheets in PDB entry 7NPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	40	47	parallel
Strand 3	A	10	14	parallel
Strand 4	A	83	85	parallel
Strand 5	A	105	108	parallel
Strand 6	A	152	154	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	236	243	anti-parallel
Strand 3	A	176	186	parallel
Strand 4	A	250	258	anti-parallel
Strand 5	A	311	318	anti-parallel
Strand 6	A	299	306	anti-parallel
Strand 7	A	279	281	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	46	first strand
Strand 2	B	10	15	parallel
Strand 3	B	83	86	parallel
Strand 4	B	105	108	parallel
Strand 5	B	152	154	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	236	244	anti-parallel
Strand 3	B	179	187	parallel
Strand 4	B	250	257	anti-parallel
Strand 5	B	311	318	anti-parallel
Strand 6	B	300	306	anti-parallel
Strand 7	B	280	281	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	40	46	parallel
Strand 3	C	10	15	parallel
Strand 4	C	83	86	parallel
Strand 5	C	105	108	parallel
Strand 6	C	152	154	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	236	244	anti-parallel
Strand 3	C	179	187	parallel
Strand 4	C	250	257	anti-parallel
Strand 5	C	311	318	anti-parallel
Strand 6	C	299	306	anti-parallel
Strand 7	C	279	281	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	46	first strand
Strand 2	D	10	15	parallel
Strand 3	D	83	86	parallel
Strand 4	D	105	108	parallel
Strand 5	D	152	154	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	210	first strand
Strand 2	D	236	243	anti-parallel
Strand 3	D	179	186	parallel
Strand 4	D	250	257	anti-parallel
Strand 5	D	311	318	anti-parallel
Strand 6	D	299	306	anti-parallel
Strand 7	D	279	281	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	46	first strand
Strand 2	E	11	15	parallel
Strand 3	E	83	86	parallel
Strand 4	E	105	108	parallel
Strand 5	E	152	154	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	210	first strand
Strand 2	E	236	243	anti-parallel
Strand 3	E	179	186	parallel
Strand 4	E	250	256	anti-parallel
Strand 5	E	311	318	anti-parallel
Strand 6	E	299	306	anti-parallel
Strand 7	E	279	281	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	40	42	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	83	86	parallel
Strand 3	F	105	108	parallel
Strand 4	F	152	154	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	210	first strand
Strand 2	F	240	243	anti-parallel
Strand 3	F	179	186	parallel
Strand 4	F	236	237	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	210	first strand
Strand 2	F	240	243	anti-parallel
Strand 3	F	179	186	parallel
Strand 4	F	250	257	anti-parallel
Strand 5	F	311	318	anti-parallel
Strand 6	F	299	305	anti-parallel
Strand 7	F	279	281	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	72	first strand
Strand 2	G	40	47	parallel
Strand 3	G	10	15	parallel
Strand 4	G	83	86	parallel
Strand 5	G	105	108	parallel
Strand 6	G	152	154	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	210	first strand
Strand 2	G	236	243	anti-parallel
Strand 3	G	177	186	parallel
Strand 4	G	250	257	anti-parallel
Strand 5	G	311	315	anti-parallel
Strand 6	G	299	306	anti-parallel
Strand 7	G	279	281	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	72	first strand
Strand 2	H	41	47	parallel
Strand 3	H	11	15	parallel
Strand 4	H	83	86	parallel
Strand 5	H	105	108	parallel
Strand 6	H	152	154	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	209	210	first strand
Strand 2	H	242	244	anti-parallel
Strand 3	H	179	187	parallel
Strand 4	H	236	239	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	209	210	first strand
Strand 2	H	242	244	anti-parallel
Strand 3	H	179	187	parallel
Strand 4	H	250	256	anti-parallel
Strand 5	H	312	318	anti-parallel
Strand 6	H	299	305	anti-parallel
Strand 7	H	279	281	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NPJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NPJ