Analysis of interatomic Contacts of Structural Units in PDB entry:
7NQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NQ4 entry

There are 3 chains in PDB entry 7NQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14GLY 403
B
 MET 1ALA 414
C
 A 25 C 44
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 7NQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 65Right-handed alpha
Helix 2
AA2
A
74 80Right-handed alpha
Helix 3
AA3
A
82 89Right-handed alpha
Helix 4
AA4
A
90 97Right-handed alpha
Helix 5
AA5
A
109 114Right-handed alpha
Helix 6
AA6
A
139 151Right-handed alpha
Helix 7
AA7
A
168 189Right-handed alpha
Helix 8
AA8
A
206 219Right-handed alpha
Helix 9
AA9
A
235 248Right-handed alpha
Helix 10
AB1
A
263 273Right-handed alpha
Helix 11
AB2
A
281 289Right-handed alpha
Helix 12
AB3
A
303 308Right-handed 310
Helix 13
AB4
A
319 325Right-handed alpha
Helix 14
AB5
A
326 335Right-handed alpha
Helix 15
AB6
A
339 366Right-handed alpha
Helix 16
AB7
A
368 382Right-handed alpha
Helix 17
AB8
A
383 387Right-handed 310
Helix 18
AB9
A
388 397Right-handed alpha
Helix 19
AC1
B
46 52Right-handed alpha
Helix 20
AC2
B
64 68Right-handed alpha
Helix 21
AC3
B
70 78Right-handed alpha
Helix 22
AC4
B
80 85Right-handed alpha
Helix 23
AC5
B
125 137Right-handed alpha
Helix 24
AC6
B
147 152Right-handed alpha
Helix 25
AC7
B
156 181Right-handed alpha
Helix 26
AC8
B
181 186Right-handed alpha
Helix 27
AC9
B
198 211Right-handed alpha
Helix 28
AD1
B
228 241Right-handed alpha
Helix 29
AD2
B
256 266Right-handed alpha
Helix 30
AD3
B
273 282Right-handed alpha
Helix 31
AD4
B
337 341Right-handed 310
Helix 32
AD5
B
353 359Right-handed alpha
Helix 33
AD6
B
360 370Right-handed alpha
Helix 34
AD7
B
372 400Right-handed alpha
Helix 35
AD8
B
402 411Right-handed alpha
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There are 8 sheets in PDB entry 7NQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 22first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
38 42anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
277 280parallel
Strand 3
A
256 259parallel
Strand 4
A
224 227parallel
Strand 5
A
196 201parallel
Strand 6
A
154 156parallel
Strand 7
A
101 105parallel
Strand 8
A
69 73parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 120first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
135 138anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
297 300anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
12 17anti-parallel
Strand 3
B
28 30anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
59 63parallel
Strand 3
B
91 95parallel
Strand 4
B
140 142parallel
Strand 5
B
188 193parallel
Strand 6
B
216 219parallel
Strand 7
B
249 251parallel
Strand 8
B
270 272parallel
Strand 9
B
32 36parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
121 124anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 286first strand
Strand 2
B
332 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il