Analysis of interatomic Contacts of Structural Units in PDB entry:
7NS7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NS7 entry

There are 4 chains in PDB entry 7NS7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11GLN 208
A
 ALA 210LYS 390
B
 LEU 11GLN 208
B
 ALA 210LYS 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7NS7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed alpha
Helix 2
AA2
A
34 42Right-handed alpha
Helix 3
AA3
A
50 69Right-handed alpha
Helix 4
AA4
A
81 94Right-handed alpha
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
223 232Right-handed alpha
Helix 7
AA7
A
243 251Right-handed alpha
Helix 8
AA8
A
265 283Right-handed alpha
Helix 9
AA9
A
283 305Right-handed alpha
Helix 10
AB1
A
313 317Right-handed 310
Helix 11
AB2
A
331 344Right-handed alpha
Helix 12
AB3
A
351 355Right-handed 310
Helix 13
AB4
A
364 368Right-handed 310
Helix 14
AB5
A
369 387Right-handed alpha
Helix 15
AB6
B
12 16Right-handed alpha
Helix 16
AB7
B
34 42Right-handed alpha
Helix 17
AB8
B
50 69Right-handed alpha
Helix 18
AB9
B
81 94Right-handed alpha
Helix 19
AC1
B
107 120Right-handed alpha
Helix 20
AC2
B
223 231Right-handed alpha
Helix 21
AC3
B
243 251Right-handed alpha
Helix 22
AC4
B
265 283Right-handed alpha
Helix 23
AC5
B
283 305Right-handed alpha
Helix 24
AC6
B
331 344Right-handed alpha
Helix 25
AC7
B
364 368Right-handed 310
Helix 26
AC8
B
369 387Right-handed alpha
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There are 6 sheets in PDB entry 7NS7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
345 346parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
218 222anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
179 183parallel
Strand 5
A
150 154parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 325first strand
Strand 2
A
358 362anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
345 346parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
218 222anti-parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
179 183parallel
Strand 5
B
150 154parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 325first strand
Strand 2
B
358 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il