Analysis of interatomic Contacts of Structural Units in PDB entry:
7NTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NTF entry

There are 2 chains in PDB entry 7NTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 79LYS 1028
B
 ALA 181LYS 1028
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 99 helices in PDB entry 7NTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 93Right-handed alpha
Helix 2
AA2
A
94 109Right-handed alpha
Helix 3
AA3
A
112 127Right-handed alpha
Helix 4
AA4
A
128 143Right-handed alpha
Helix 5
AA5
A
146 161Right-handed alpha
Helix 6
AA6
A
162 177Right-handed alpha
Helix 7
AA7
A
180 195Right-handed alpha
Helix 8
AA8
A
196 211Right-handed alpha
Helix 9
AA9
A
214 228Right-handed alpha
Helix 10
AB1
A
230 245Right-handed alpha
Helix 11
AB2
A
248 262Right-handed alpha
Helix 12
AB3
A
264 279Right-handed alpha
Helix 13
AB4
A
282 297Right-handed alpha
Helix 14
AB5
A
298 313Right-handed alpha
Helix 15
AB6
A
317 331Right-handed alpha
Helix 16
AB7
A
332 347Right-handed alpha
Helix 17
AB8
A
350 365Right-handed alpha
Helix 18
AB9
A
366 381Right-handed alpha
Helix 19
AC1
A
385 398Right-handed alpha
Helix 20
AC2
A
400 415Right-handed alpha
Helix 21
AC3
A
418 433Right-handed alpha
Helix 22
AC4
A
434 449Right-handed alpha
Helix 23
AC5
A
452 467Right-handed alpha
Helix 24
AC6
A
471 489Right-handed alpha
Helix 25
AC7
A
497 503Right-handed 310
Helix 26
AC8
A
506 526Right-handed alpha
Helix 27
AC9
A
560 565Right-handed alpha
Helix 28
AD1
A
566 571Right-handed alpha
Helix 29
AD2
A
589 599Right-handed alpha
Helix 30
AD3
A
610 622Right-handed alpha
Helix 31
AD4
A
638 643Right-handed alpha
Helix 32
AD5
A
675 682Right-handed 310
Helix 33
AD6
A
697 702Right-handed alpha
Helix 34
AD7
A
703 707Right-handed 310
Helix 35
AD8
A
730 738Right-handed alpha
Helix 36
AD9
A
770 783Right-handed alpha
Helix 37
AE1
A
799 809Right-handed alpha
Helix 38
AE2
A
823 826Right-handed 310
Helix 39
AE3
A
839 843Right-handed 310
Helix 40
AE4
A
844 858Right-handed alpha
Helix 41
AE5
A
872 883Right-handed alpha
Helix 42
AE6
A
886 888Right-handed 310
Helix 43
AE7
A
897 906Right-handed alpha
Helix 44
AE8
A
920 928Right-handed alpha
Helix 45
AE9
A
940 943Right-handed 310
Helix 46
AF1
A
944 954Right-handed alpha
Helix 47
AF2
A
955 959Right-handed 310
Helix 48
AF3
A
962 976Right-handed alpha
Helix 49
AF4
A
976 994Right-handed alpha
Helix 50
AF5
A
995 997Right-handed 310
Helix 51
AF6
A
998 1019Right-handed alpha
Helix 52
AF7
B
182 194Right-handed alpha
Helix 53
AF8
B
196 211Right-handed alpha
Helix 54
AF9
B
214 228Right-handed alpha
Helix 55
AG1
B
230 245Right-handed alpha
Helix 56
AG2
B
248 263Right-handed alpha
Helix 57
AG3
B
264 279Right-handed alpha
Helix 58
AG4
B
282 297Right-handed alpha
Helix 59
AG5
B
298 313Right-handed alpha
Helix 60
AG6
B
316 331Right-handed alpha
Helix 61
AG7
B
332 347Right-handed alpha
Helix 62
AG8
B
350 365Right-handed alpha
Helix 63
AG9
B
367 381Right-handed alpha
Helix 64
AH1
B
384 398Right-handed alpha
Helix 65
AH2
B
400 415Right-handed alpha
Helix 66
AH3
B
418 432Right-handed alpha
Helix 67
AH4
B
434 449Right-handed alpha
Helix 68
AH5
B
452 467Right-handed alpha
Helix 69
AH6
B
471 490Right-handed alpha
Helix 70
AH7
B
496 501Right-handed alpha
Helix 71
AH8
B
506 527Right-handed alpha
Helix 72
AH9
B
560 565Right-handed alpha
Helix 73
AI1
B
566 571Right-handed alpha
Helix 74
AI2
B
589 599Right-handed alpha
Helix 75
AI3
B
604 608Right-handed 310
Helix 76
AI4
B
610 622Right-handed alpha
Helix 77
AI5
B
638 644Right-handed alpha
Helix 78
AI6
B
675 682Right-handed 310
Helix 79
AI7
B
697 702Right-handed alpha
Helix 80
AI8
B
703 707Right-handed 310
Helix 81
AI9
B
730 738Right-handed alpha
Helix 82
AJ1
B
770 783Right-handed alpha
Helix 83
AJ2
B
799 804Right-handed alpha
Helix 84
AJ3
B
804 809Right-handed alpha
Helix 85
AJ4
B
823 826Right-handed 310
Helix 86
AJ5
B
839 843Right-handed 310
Helix 87
AJ6
B
844 857Right-handed alpha
Helix 88
AJ7
B
872 883Right-handed alpha
Helix 89
AJ8
B
886 888Right-handed 310
Helix 90
AJ9
B
897 904Right-handed alpha
Helix 91
AK1
B
905 908Right-handed 310
Helix 92
AK2
B
919 928Right-handed alpha
Helix 93
AK3
B
940 943Right-handed 310
Helix 94
AK4
B
944 954Right-handed alpha
Helix 95
AK5
B
955 959Right-handed 310
Helix 96
AK6
B
962 976Right-handed alpha
Helix 97
AK7
B
976 994Right-handed alpha
Helix 98
AK8
B
995 997Right-handed 310
Helix 99
AK9
B
998 1019Right-handed alpha
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There are 10 sheets in PDB entry 7NTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 552first strand
Strand 2
A
576 582parallel
Strand 3
A
601 604parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
650 651first strand
Strand 2
A
666 670parallel
Strand 3
A
685 689parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 728first strand
Strand 2
A
817 821anti-parallel
Strand 3
A
792 795parallel
Strand 4
A
786 789anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 745first strand
Strand 2
A
763 766anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
890 893first strand
Strand 2
A
861 866parallel
Strand 3
A
832 835parallel
Strand 4
A
910 911parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
546 552first strand
Strand 2
B
576 582parallel
Strand 3
B
601 603parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
650 651first strand
Strand 2
B
666 670parallel
Strand 3
B
685 689parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
724 727first strand
Strand 2
B
817 821anti-parallel
Strand 3
B
792 795parallel
Strand 4
B
786 789anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
742 744first strand
Strand 2
B
764 766anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
890 893first strand
Strand 2
B
861 866parallel
Strand 3
B
832 835parallel
Strand 4
B
910 912parallel
Strand 5
B
933 934parallel
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