Analysis of interatomic Contacts of Structural Units in PDB entry:
7NUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NUB entry

There is 1 chain in PDB entry 7NUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 815
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 7NUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 22Right-handed alpha
Helix 2
AA2
A
49 69Right-handed alpha
Helix 3
AA3
A
83 93Right-handed alpha
Helix 4
AA4
A
96 115Right-handed alpha
Helix 5
AA5
A
120 124Right-handed 310
Helix 6
AA6
A
129 146Right-handed alpha
Helix 7
AA7
A
167 169Right-handed 310
Helix 8
AA8
A
195 197Right-handed 310
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
213 225Right-handed alpha
Helix 11
AB2
A
245 249Right-handed 310
Helix 12
AB3
A
258 262Right-handed 310
Helix 13
AB4
A
274 281Right-handed alpha
Helix 14
AB5
A
284 295Right-handed alpha
Helix 15
AB6
A
347 350Right-handed 310
Helix 16
AB7
A
351 359Right-handed alpha
Helix 17
AB8
A
382 387Right-handed 310
Helix 18
AB9
A
403 419Right-handed alpha
Helix 19
AC1
A
458 462Right-handed 310
Helix 20
AC2
A
477 481Right-handed 310
Helix 21
AC3
A
482 486Right-handed alpha
Helix 22
AC4
A
505 511Right-handed 310
Helix 23
AC5
A
512 517Right-handed alpha
Helix 24
AC6
A
528 536Right-handed alpha
Helix 25
AC7
A
544 548Right-handed 310
Helix 26
AC8
A
550 565Right-handed alpha
Helix 27
AC9
A
644 652Right-handed alpha
Helix 28
AD1
A
653 664Right-handed alpha
Helix 29
AD2
A
674 697Right-handed alpha
Helix 30
AD3
A
713 736Right-handed alpha
Helix 31
AD4
A
739 757Right-handed alpha
Helix 32
AD5
A
761 779Right-handed alpha
Helix 33
AD6
A
783 795Right-handed alpha
Helix 34
AD7
A
798 803Right-handed alpha
Helix 35
AD8
A
808 812Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 7NUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
34 39parallel
Strand 3
A
538 542parallel
Strand 4
A
574 578parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
125 126parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
190 193anti-parallel
Strand 3
A
432 433anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
155 159anti-parallel
Strand 3
A
184 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 256first strand
Strand 2
A
227 236anti-parallel
Strand 3
A
311 319anti-parallel
Strand 4
A
326 332anti-parallel
Strand 5
A
267 270parallel
Strand 6
A
343 346anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 256first strand
Strand 2
A
227 236anti-parallel
Strand 3
A
421 426anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
392 393anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
446 449anti-parallel
Strand 3
A
496 499anti-parallel
Strand 4
A
487 489anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
631 634first strand
Strand 2
A
583 587anti-parallel
Strand 3
A
671 672parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il