Analysis of interatomic Contacts of Structural Units in PDB entry:
7NUU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NUU entry

There are 2 chains in PDB entry 7NUU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 8	ASP 405
B	ALA 10	THR 273

There are 28 helices in PDB entry 7NUU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	48	Right-handed alpha
Helix 2	AA2	A	86	98	Right-handed alpha
Helix 3	AA3	A	99	101	Right-handed 310
Helix 4	AA4	A	114	122	Right-handed alpha
Helix 5	AA5	A	123	125	Right-handed 310
Helix 6	AA6	A	156	160	Right-handed 310
Helix 7	AA7	A	167	176	Right-handed alpha
Helix 8	AA8	A	192	203	Right-handed alpha
Helix 9	AA9	A	215	226	Right-handed alpha
Helix 10	AB1	A	245	252	Right-handed 310
Helix 11	AB2	A	274	285	Right-handed alpha
Helix 12	AB3	A	334	347	Right-handed alpha
Helix 13	AB4	A	349	357	Right-handed alpha
Helix 14	AB5	A	358	365	Right-handed alpha
Helix 15	AB6	B	40	47	Right-handed 310
Helix 16	AB7	B	86	98	Right-handed alpha
Helix 17	AB8	B	99	101	Right-handed 310
Helix 18	AB9	B	114	122	Right-handed alpha
Helix 19	AC1	B	123	125	Right-handed 310
Helix 20	AC2	B	156	160	Right-handed 310
Helix 21	AC3	B	167	176	Right-handed alpha
Helix 22	AC4	B	192	203	Right-handed alpha
Helix 23	AC5	B	215	226	Right-handed alpha
Helix 24	AC6	B	245	252	Right-handed 310
Helix 25	AC7	B	274	285	Right-handed alpha
Helix 26	AC8	B	334	347	Right-handed alpha
Helix 27	AC9	B	349	357	Right-handed alpha
Helix 28	AD1	B	358	365	Right-handed alpha

There are 12 sheets in PDB entry 7NUU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	31	34	anti-parallel
Strand 3	A	12	16	anti-parallel
Strand 4	A	54	57	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	19	22	anti-parallel
Strand 3	A	62	65	parallel
Strand 4	A	382	385	anti-parallel
Strand 5	A	391	396	anti-parallel
Strand 6	A	399	403	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	103	110	parallel
Strand 3	A	136	137	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	103	110	parallel
Strand 3	A	140	143	parallel
Strand 4	A	181	186	parallel
Strand 5	A	206	209	parallel
Strand 6	A	229	230	parallel
Strand 7	A	263	266	parallel
Strand 8	A	289	291	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	78	79	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	308	first strand
Strand 2	A	311	316	anti-parallel
Strand 3	A	319	322	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	31	34	anti-parallel
Strand 3	B	12	16	anti-parallel
Strand 4	B	54	57	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	19	22	anti-parallel
Strand 3	B	62	65	parallel
Strand 4	B	382	385	anti-parallel
Strand 5	B	391	396	anti-parallel
Strand 6	B	399	403	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	103	111	parallel
Strand 3	B	136	137	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	103	111	parallel
Strand 3	B	140	143	parallel
Strand 4	B	181	186	parallel
Strand 5	B	206	209	parallel
Strand 6	B	229	230	parallel
Strand 7	B	263	266	parallel
Strand 8	B	289	291	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	78	79	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	308	first strand
Strand 2	B	311	315	anti-parallel
Strand 3	B	320	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NUU

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NUU