Analysis of interatomic Contacts of Structural Units in PDB entry:
7NVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NVH entry

There is 1 chain in PDB entry 7NVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 752
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 7NVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
21 26Right-handed alpha
Helix 3
AA3
A
30 32Right-handed 310
Helix 4
AA4
A
33 37Right-handed alpha
Helix 5
AA5
A
48 62Right-handed alpha
Helix 6
AA6
A
83 95Right-handed alpha
Helix 7
AA7
A
117 121Right-handed 310
Helix 8
AA8
A
138 148Right-handed alpha
Helix 9
AA9
A
149 154Right-handed alpha
Helix 10
AB1
A
155 159Right-handed 310
Helix 11
AB2
A
165 175Right-handed alpha
Helix 12
AB3
A
175 201Right-handed alpha
Helix 13
AB4
A
202 228Right-handed alpha
Helix 14
AB5
A
236 247Right-handed alpha
Helix 15
AB6
A
247 266Right-handed alpha
Helix 16
AB7
A
269 298Right-handed alpha
Helix 17
AB8
A
299 302Right-handed 310
Helix 18
AB9
A
304 337Right-handed alpha
Helix 19
AC1
A
338 341Right-handed 310
Helix 20
AC2
A
384 392Right-handed alpha
Helix 21
AC3
A
400 409Right-handed alpha
Helix 22
AC4
A
411 416Right-handed 310
Helix 23
AC5
A
423 427Right-handed 310
Helix 24
AC6
A
433 444Right-handed alpha
Helix 25
AC7
A
465 477Right-handed alpha
Helix 26
AC8
A
488 492Right-handed 310
Helix 27
AC9
A
517 519Right-handed 310
Helix 28
AD1
A
520 529Right-handed alpha
Helix 29
AD2
A
544 557Right-handed alpha
Helix 30
AD3
A
558 578Right-handed alpha
Helix 31
AD4
A
581 607Right-handed alpha
Helix 32
AD5
A
611 616Right-handed alpha
Helix 33
AD6
A
623 655Right-handed alpha
Helix 34
AD7
A
658 670Right-handed alpha
Helix 35
AD8
A
670 690Right-handed alpha
Helix 36
AD9
A
693 713Right-handed alpha
Helix 37
AE1
A
713 727Right-handed alpha
Helix 38
AE2
A
728 732Right-handed 310
Helix 39
AE3
A
734 744Right-handed alpha
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There are 3 sheets in PDB entry 7NVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
233 234parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
127 131anti-parallel
Strand 3
A
70 74anti-parallel
Strand 4
A
162 164anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
508 514anti-parallel
Strand 3
A
451 457anti-parallel
Strand 4
A
540 543anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il