Analysis of interatomic Contacts of Structural Units in PDB entry:
7NWC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NWC entry

There are 4 chains in PDB entry 7NWC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 22	SER 386
B	VAL 22	SER 386
C	VAL 22	SER 386
D	VAL 22	SER 386

There are 44 helices in PDB entry 7NWC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	30	Right-handed 310
Helix 2	AA2	A	85	90	Right-handed alpha
Helix 3	AA3	A	112	128	Right-handed alpha
Helix 4	AA4	A	133	148	Right-handed alpha
Helix 5	AA5	A	149	152	Right-handed 310
Helix 6	AA6	A	224	229	Right-handed alpha
Helix 7	AA7	A	230	240	Right-handed alpha
Helix 8	AA8	A	288	302	Right-handed alpha
Helix 9	AA9	A	312	322	Right-handed alpha
Helix 10	AB1	A	354	358	Right-handed 310
Helix 11	AB2	A	359	374	Right-handed alpha
Helix 12	AB3	B	26	30	Right-handed 310
Helix 13	AB4	B	85	90	Right-handed alpha
Helix 14	AB5	B	112	128	Right-handed alpha
Helix 15	AB6	B	133	148	Right-handed alpha
Helix 16	AB7	B	149	152	Right-handed 310
Helix 17	AB8	B	224	229	Right-handed alpha
Helix 18	AB9	B	230	240	Right-handed alpha
Helix 19	AC1	B	288	302	Right-handed alpha
Helix 20	AC2	B	313	322	Right-handed alpha
Helix 21	AC3	B	354	358	Right-handed 310
Helix 22	AC4	B	359	374	Right-handed alpha
Helix 23	AC5	C	26	30	Right-handed 310
Helix 24	AC6	C	85	90	Right-handed alpha
Helix 25	AC7	C	112	128	Right-handed alpha
Helix 26	AC8	C	133	148	Right-handed alpha
Helix 27	AC9	C	149	152	Right-handed 310
Helix 28	AD1	C	224	229	Right-handed alpha
Helix 29	AD2	C	230	240	Right-handed alpha
Helix 30	AD3	C	288	302	Right-handed alpha
Helix 31	AD4	C	313	322	Right-handed alpha
Helix 32	AD5	C	354	358	Right-handed 310
Helix 33	AD6	C	359	374	Right-handed alpha
Helix 34	AD7	D	26	30	Right-handed 310
Helix 35	AD8	D	85	90	Right-handed alpha
Helix 36	AD9	D	112	128	Right-handed alpha
Helix 37	AE1	D	133	148	Right-handed alpha
Helix 38	AE2	D	149	152	Right-handed 310
Helix 39	AE3	D	224	229	Right-handed alpha
Helix 40	AE4	D	230	240	Right-handed alpha
Helix 41	AE5	D	288	302	Right-handed alpha
Helix 42	AE6	D	312	322	Right-handed alpha
Helix 43	AE7	D	354	358	Right-handed 310
Helix 44	AE8	D	359	374	Right-handed alpha

There are 20 sheets in PDB entry 7NWC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	56	63	anti-parallel
Strand 3	A	180	190	anti-parallel
Strand 4	A	159	168	anti-parallel
Strand 5	A	93	95	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	162	first strand
Strand 2	A	98	102	anti-parallel
Strand 3	A	108	111	anti-parallel
Strand 4	A	382	384	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	274	278	parallel
Strand 3	A	262	268	anti-parallel
Strand 4	A	325	332	anti-parallel
Strand 5	A	336	345	anti-parallel
Strand 6	A	202	206	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	345	first strand
Strand 2	A	348	351	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	249	first strand
Strand 2	A	254	258	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	56	63	anti-parallel
Strand 3	B	180	190	anti-parallel
Strand 4	B	159	168	anti-parallel
Strand 5	B	93	95	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	162	first strand
Strand 2	B	98	102	anti-parallel
Strand 3	B	108	111	anti-parallel
Strand 4	B	382	384	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	308	first strand
Strand 2	B	274	278	parallel
Strand 3	B	262	268	anti-parallel
Strand 4	B	325	332	anti-parallel
Strand 5	B	336	339	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	351	first strand
Strand 2	B	340	345	anti-parallel
Strand 3	B	202	206	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	249	first strand
Strand 2	B	254	258	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	56	63	anti-parallel
Strand 3	C	180	190	anti-parallel
Strand 4	C	159	168	anti-parallel
Strand 5	C	93	95	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	162	first strand
Strand 2	C	98	102	anti-parallel
Strand 3	C	108	111	anti-parallel
Strand 4	C	382	384	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	308	first strand
Strand 2	C	274	278	parallel
Strand 3	C	262	268	anti-parallel
Strand 4	C	325	332	anti-parallel
Strand 5	C	336	339	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	351	first strand
Strand 2	C	340	345	anti-parallel
Strand 3	C	202	206	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	249	first strand
Strand 2	C	254	258	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	75	first strand
Strand 2	D	56	63	anti-parallel
Strand 3	D	180	190	anti-parallel
Strand 4	D	159	168	anti-parallel
Strand 5	D	93	95	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	162	first strand
Strand 2	D	98	102	anti-parallel
Strand 3	D	108	111	anti-parallel
Strand 4	D	382	384	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	308	first strand
Strand 2	D	274	278	parallel
Strand 3	D	262	268	anti-parallel
Strand 4	D	325	332	anti-parallel
Strand 5	D	336	339	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	351	first strand
Strand 2	D	340	345	anti-parallel
Strand 3	D	202	206	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	249	first strand
Strand 2	D	254	258	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NWC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NWC