Analysis of interatomic Contacts of Structural Units in PDB entry:
7NWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NWR entry

There are 2 chains in PDB entry 7NWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 4ALA 429
A
 GLU 4ALA 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 7NWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
21 36Right-handed alpha
Helix 2
AA2
B
44 49Right-handed alpha
Helix 3
AA3
B
62 64Right-handed 310
Helix 4
AA4
B
69 71Right-handed 310
Helix 5
AA5
B
84 93Right-handed alpha
Helix 6
AA6
B
96 102Right-handed alpha
Helix 7
AA7
B
103 109Right-handed alpha
Helix 8
AA8
B
118 122Right-handed 310
Helix 9
AA9
B
135 155Right-handed alpha
Helix 10
AB1
B
174 178Right-handed 310
Helix 11
AB2
B
179 189Right-handed alpha
Helix 12
AB3
B
196 208Right-handed alpha
Helix 13
AB4
B
223 234Right-handed alpha
Helix 14
AB5
B
245 260Right-handed alpha
Helix 15
AB6
B
275 282Right-handed alpha
Helix 16
AB7
B
283 296Right-handed alpha
Helix 17
AB8
B
298 303Right-handed alpha
Helix 18
AB9
B
307 312Right-handed alpha
Helix 19
AC1
B
324 327Right-handed 310
Helix 20
AC2
B
341 343Right-handed 310
Helix 21
AC3
B
355 377Right-handed alpha
Helix 22
AC4
B
384 390Right-handed 310
Helix 23
AC5
B
404 420Right-handed alpha
Helix 24
AC6
A
21 36Right-handed alpha
Helix 25
AC7
A
44 49Right-handed alpha
Helix 26
AC8
A
62 64Right-handed 310
Helix 27
AC9
A
69 71Right-handed 310
Helix 28
AD1
A
84 93Right-handed alpha
Helix 29
AD2
A
96 102Right-handed alpha
Helix 30
AD3
A
103 109Right-handed alpha
Helix 31
AD4
A
118 122Right-handed 310
Helix 32
AD5
A
135 155Right-handed alpha
Helix 33
AD6
A
174 178Right-handed 310
Helix 34
AD7
A
179 189Right-handed alpha
Helix 35
AD8
A
196 208Right-handed alpha
Helix 36
AD9
A
223 234Right-handed alpha
Helix 37
AE1
A
245 260Right-handed alpha
Helix 38
AE2
A
275 282Right-handed alpha
Helix 39
AE3
A
283 296Right-handed alpha
Helix 40
AE4
A
298 303Right-handed alpha
Helix 41
AE5
A
307 312Right-handed alpha
Helix 42
AE6
A
324 327Right-handed 310
Helix 43
AE7
A
341 343Right-handed 310
Helix 44
AE8
A
355 377Right-handed alpha
Helix 45
AE9
A
384 390Right-handed 310
Helix 46
AF1
A
404 420Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7NWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
73 79parallel
Strand 3
B
11 17parallel
Strand 4
B
156 163parallel
Strand 5
B
212 214parallel
Strand 6
B
236 239parallel
Strand 7
B
381 382parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 318first strand
Strand 2
B
263 273parallel
Strand 3
B
331 339anti-parallel
Strand 4
B
345 353anti-parallel
Strand 5
A
345 353anti-parallel
Strand 6
A
331 339anti-parallel
Strand 7
A
263 273anti-parallel
Strand 8
A
315 318parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 322first strand
Strand 2
B
263 273parallel
Strand 3
B
331 339anti-parallel
Strand 4
B
345 353anti-parallel
Strand 5
A
345 353anti-parallel
Strand 6
A
331 339anti-parallel
Strand 7
A
263 273anti-parallel
Strand 8
A
321 322parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
73 79parallel
Strand 3
A
11 17parallel
Strand 4
A
156 163parallel
Strand 5
A
212 214parallel
Strand 6
A
236 239parallel
Strand 7
A
381 382parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
58 60anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il