Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 7NX5 entry
There are 12 chains in PDB entry 7NX5
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
MET 174 | PRO 235 |
B
|
GLU 176 | ASP 236 |
C
|
C -8 | T -3 |
C
|
G -1 | C 7 |
D
|
G -7 | G 0 |
D
|
G 2 | G 8 |
E
|
GLU 176 | ASP 236 |
F
|
MET 174 | PRO 235 |
G
|
T -7 | T -3 |
G
|
G -1 | T 5 |
H
|
C -6 | G 0 |
H
|
G 2 | G 5 |
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There are 7
helices in PDB entry 7NX5. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 175 |
222 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 226 |
231 | Right-handed alpha |
| Helix 3 |
AA3 | B
| 177 |
222 | Right-handed alpha |
| Helix 4 |
AA4 | E
| 177 |
222 | Right-handed alpha |
| Helix 5 |
AA5 | E
| 226 |
231 | Right-handed alpha |
| Helix 6 |
AA6 | F
| 175 |
222 | Right-handed alpha |
| Helix 7 |
AA7 | F
| 226 |
231 | Right-handed alpha |
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There are no sheets in PDB entry
7NX5
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il