Analysis of interatomic Contacts of Structural Units in PDB entry:
7NXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NXF entry

There is 1 chain in PDB entry 7NXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 66GLN 920
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 7NXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 83Right-handed 310
Helix 2
AA2
A
113 119Right-handed alpha
Helix 3
AA3
A
122 134Right-handed alpha
Helix 4
AA4
A
142 175Right-handed alpha
Helix 5
AA5
A
285 315Right-handed alpha
Helix 6
AA6
A
318 334Right-handed alpha
Helix 7
AA7
A
337 356Right-handed alpha
Helix 8
AA8
A
364 372Right-handed alpha
Helix 9
AA9
A
402 411Right-handed alpha
Helix 10
AB1
A
420 429Right-handed alpha
Helix 11
AB2
A
476 485Right-handed alpha
Helix 12
AB3
A
491 508Right-handed alpha
Helix 13
AB4
A
539 550Right-handed alpha
Helix 14
AB5
A
561 573Right-handed alpha
Helix 15
AB6
A
581 585Right-handed alpha
Helix 16
AB7
A
593 603Right-handed alpha
Helix 17
AB8
A
611 625Right-handed alpha
Helix 18
AB9
A
638 645Right-handed alpha
Helix 19
AC1
A
655 662Right-handed alpha
Helix 20
AC2
A
670 714Right-handed alpha
Helix 21
AC3
A
718 729Right-handed alpha
Helix 22
AC4
A
751 781Right-handed alpha
Helix 23
AC5
A
792 807Right-handed alpha
Helix 24
AC6
A
808 813Right-handed alpha
Helix 25
AC7
A
824 845Right-handed alpha
Helix 26
AC8
A
853 878Right-handed alpha
Helix 27
AC9
A
896 919Right-handed alpha
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There are 4 sheets in PDB entry 7NXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 205first strand
Strand 2
A
255 260anti-parallel
Strand 3
A
214 216anti-parallel
Strand 4
A
244 245anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
250 253anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
664 666anti-parallel
Strand 3
A
647 650parallel
Strand 4
A
629 633parallel
Strand 5
A
374 378parallel
Strand 6
A
553 558parallel
Strand 7
A
606 608parallel
Strand 8
A
578 580parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
525 533anti-parallel
Strand 3
A
511 517anti-parallel
Strand 4
A
469 475anti-parallel
Strand 5
A
457 463anti-parallel
Strand 6
A
445 449anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il