Analysis of interatomic Contacts of Structural Units in PDB entry:
7NXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NXJ entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7NXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 695TYR 870
A
 ASN 872LYS 1023
B
 LYS 21GLN 264
C
 ILE 695TYR 870
C
 ASN 872CYS 1017
D
 LYS 21HIS 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 7NXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
701 703Right-handed 310
Helix 2
AA2
A
746 757Right-handed alpha
Helix 3
AA3
A
798 804Right-handed alpha
Helix 4
AA4
A
810 831Right-handed alpha
Helix 5
AA5
A
839 841Right-handed 310
Helix 6
AA6
A
876 880Right-handed 310
Helix 7
AA7
A
881 886Right-handed alpha
Helix 8
AA8
A
893 909Right-handed alpha
Helix 9
AA9
A
918 931Right-handed alpha
Helix 10
AB1
A
938 944Right-handed 310
Helix 11
AB2
A
959 964Right-handed alpha
Helix 12
AB3
A
968 979Right-handed alpha
Helix 13
AB4
A
982 986Right-handed 310
Helix 14
AB5
A
988 995Right-handed alpha
Helix 15
AB6
A
1002 1006Right-handed 310
Helix 16
AB7
B
29 33Right-handed 310
Helix 17
AB8
B
34 39Right-handed alpha
Helix 18
AB9
B
42 64Right-handed alpha
Helix 19
AC1
B
67 82Right-handed alpha
Helix 20
AC2
B
91 107Right-handed alpha
Helix 21
AC3
B
112 124Right-handed alpha
Helix 22
AC4
B
125 130Right-handed alpha
Helix 23
AC5
B
131 133Right-handed 310
Helix 24
AC6
B
135 151Right-handed alpha
Helix 25
AC7
B
159 169Right-handed alpha
Helix 26
AC8
B
174 193Right-handed alpha
Helix 27
AC9
B
196 201Right-handed alpha
Helix 28
AD1
B
202 219Right-handed alpha
Helix 29
AD2
B
221 226Right-handed 310
Helix 30
AD3
B
233 238Right-handed 310
Helix 31
AD4
B
243 257Right-handed alpha
Helix 32
AD5
B
258 260Right-handed 310
Helix 33
AD6
C
701 703Right-handed 310
Helix 34
AD7
C
746 757Right-handed alpha
Helix 35
AD8
C
798 803Right-handed alpha
Helix 36
AD9
C
810 831Right-handed alpha
Helix 37
AE1
C
839 841Right-handed 310
Helix 38
AE2
C
876 880Right-handed 310
Helix 39
AE3
C
881 886Right-handed alpha
Helix 40
AE4
C
893 909Right-handed alpha
Helix 41
AE5
C
918 931Right-handed alpha
Helix 42
AE6
C
938 944Right-handed 310
Helix 43
AE7
C
959 964Right-handed alpha
Helix 44
AE8
C
968 979Right-handed alpha
Helix 45
AE9
C
982 986Right-handed 310
Helix 46
AF1
C
988 995Right-handed alpha
Helix 47
AF2
C
1002 1006Right-handed 310
Helix 48
AF3
D
27 32Right-handed alpha
Helix 49
AF4
D
34 39Right-handed alpha
Helix 50
AF5
D
42 64Right-handed alpha
Helix 51
AF6
D
67 82Right-handed alpha
Helix 52
AF7
D
91 107Right-handed alpha
Helix 53
AF8
D
112 124Right-handed alpha
Helix 54
AF9
D
125 130Right-handed alpha
Helix 55
AG1
D
131 133Right-handed 310
Helix 56
AG2
D
135 151Right-handed alpha
Helix 57
AG3
D
159 169Right-handed alpha
Helix 58
AG4
D
174 193Right-handed alpha
Helix 59
AG5
D
196 201Right-handed alpha
Helix 60
AG6
D
202 218Right-handed alpha
Helix 61
AG7
D
221 226Right-handed 310
Helix 62
AG8
D
233 238Right-handed 310
Helix 63
AG9
D
243 256Right-handed alpha
Helix 64
AH1
D
257 259Right-handed 310
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There are 6 sheets in PDB entry 7NXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 713first strand
Strand 2
A
718 724anti-parallel
Strand 3
A
730 736anti-parallel
Strand 4
A
787 792anti-parallel
Strand 5
A
767 772anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 797first strand
Strand 2
A
843 845anti-parallel
Strand 3
A
851 853anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 834first strand
Strand 2
A
860 861anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
705 713first strand
Strand 2
C
718 724anti-parallel
Strand 3
C
730 737anti-parallel
Strand 4
C
786 792anti-parallel
Strand 5
C
767 772anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
796 797first strand
Strand 2
C
843 845anti-parallel
Strand 3
C
851 853anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
833 834first strand
Strand 2
C
860 861anti-parallel
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