Analysis of interatomic Contacts of Structural Units in PDB entry:
7NXV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NXV entry

There are 6 chains in PDB entry 7NXV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	PHE 375
B	LEU 1	THR 260
C	TRP 582	LEU 619
D	THR 5	PHE 375
E	GLU 583	ASN 621
F	LEU 1	THR 260

There are 69 helices in PDB entry 7NXV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	112	126	Right-handed alpha
Helix 5	AA5	A	137	145	Right-handed alpha
Helix 6	AA6	A	172	175	Right-handed 310
Helix 7	AA7	A	181	196	Right-handed alpha
Helix 8	AA8	A	202	207	Right-handed alpha
Helix 9	AA9	A	207	217	Right-handed alpha
Helix 10	AB1	A	222	233	Right-handed alpha
Helix 11	AB2	A	252	260	Right-handed alpha
Helix 12	AB3	A	261	262	Right-handed 310
Helix 13	AB4	A	263	268	Right-handed 310
Helix 14	AB5	A	273	284	Right-handed alpha
Helix 15	AB6	A	289	295	Right-handed alpha
Helix 16	AB7	A	301	305	Right-handed 310
Helix 17	AB8	A	308	321	Right-handed alpha
Helix 18	AB9	A	337	347	Right-handed alpha
Helix 19	AC1	A	348	349	Right-handed 310
Helix 20	AC2	A	350	355	Right-handed 310
Helix 21	AC3	A	359	366	Right-handed alpha
Helix 22	AC4	A	368	374	Right-handed alpha
Helix 23	AC5	B	12	18	Right-handed alpha
Helix 24	AC6	B	18	30	Right-handed alpha
Helix 25	AC7	B	45	56	Right-handed alpha
Helix 26	AC8	B	136	138	Right-handed 310
Helix 27	AC9	B	139	159	Right-handed alpha
Helix 28	AD1	B	177	183	Right-handed 310
Helix 29	AD2	B	184	189	Right-handed alpha
Helix 30	AD3	B	218	225	Right-handed alpha
Helix 31	AD4	B	234	239	Right-handed alpha
Helix 32	AD5	B	242	250	Right-handed alpha
Helix 33	AD6	C	583	603	Right-handed alpha
Helix 34	AD7	C	604	607	Right-handed 310
Helix 35	AD8	C	608	619	Right-handed alpha
Helix 36	AD9	D	55	61	Right-handed alpha
Helix 37	AE1	D	78	92	Right-handed alpha
Helix 38	AE2	D	97	101	Right-handed 310
Helix 39	AE3	D	112	126	Right-handed alpha
Helix 40	AE4	D	137	145	Right-handed alpha
Helix 41	AE5	D	172	175	Right-handed 310
Helix 42	AE6	D	181	195	Right-handed alpha
Helix 43	AE7	D	202	217	Right-handed alpha
Helix 44	AE8	D	222	232	Right-handed alpha
Helix 45	AE9	D	252	260	Right-handed alpha
Helix 46	AF1	D	261	262	Right-handed 310
Helix 47	AF2	D	263	268	Right-handed 310
Helix 48	AF3	D	273	284	Right-handed alpha
Helix 49	AF4	D	285	288	Right-handed 310
Helix 50	AF5	D	289	295	Right-handed alpha
Helix 51	AF6	D	301	305	Right-handed 310
Helix 52	AF7	D	308	321	Right-handed alpha
Helix 53	AF8	D	337	347	Right-handed alpha
Helix 54	AF9	D	348	355	Right-handed 310
Helix 55	AG1	D	359	366	Right-handed alpha
Helix 56	AG2	D	368	374	Right-handed alpha
Helix 57	AG3	E	584	604	Right-handed alpha
Helix 58	AG4	E	605	607	Right-handed 310
Helix 59	AG5	E	608	620	Right-handed alpha
Helix 60	AG6	F	12	18	Right-handed alpha
Helix 61	AG7	F	18	31	Right-handed alpha
Helix 62	AG8	F	45	56	Right-handed alpha
Helix 63	AG9	F	136	138	Right-handed 310
Helix 64	AH1	F	139	159	Right-handed alpha
Helix 65	AH2	F	177	183	Right-handed 310
Helix 66	AH3	F	184	189	Right-handed alpha
Helix 67	AH4	F	218	225	Right-handed alpha
Helix 68	AH5	F	234	239	Right-handed alpha
Helix 69	AH6	F	242	250	Right-handed alpha

There are 16 sheets in PDB entry 7NXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	B	64	67	parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	34	40	anti-parallel
Strand 5	B	2	11	parallel
Strand 6	B	255	258	anti-parallel
Strand 7	B	231	232	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	96	first strand
Strand 2	B	114	119	anti-parallel
Strand 3	B	127	132	anti-parallel
Strand 4	B	163	168	parallel
Strand 5	B	212	217	anti-parallel
Strand 6	B	192	194	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	65	68	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	F	64	67	parallel
Strand 3	F	79	84	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	2	11	parallel
Strand 6	F	255	258	anti-parallel
Strand 7	F	231	232	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	75	76	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	247	250	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	96	first strand
Strand 2	F	114	119	anti-parallel
Strand 3	F	127	132	anti-parallel
Strand 4	F	163	168	parallel
Strand 5	F	212	217	anti-parallel
Strand 6	F	192	194	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NXV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NXV