Analysis of interatomic Contacts of Structural Units in PDB entry:
7NY1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NY1 entry

There are 6 chains in PDB entry 7NY1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 66	GLN 920
B	GLU 66	GLN 920
C	GLU 66	GLN 920
D	GLU 66	GLN 920
E	GLU 66	GLN 920
F	GLU 66	GLN 920

There are162 helices in PDB entry 7NY1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	113	119	Right-handed alpha
Helix 3	AA3	A	122	134	Right-handed alpha
Helix 4	AA4	A	142	175	Right-handed alpha
Helix 5	AA5	A	285	315	Right-handed alpha
Helix 6	AA6	A	318	334	Right-handed alpha
Helix 7	AA7	A	337	356	Right-handed alpha
Helix 8	AA8	A	364	372	Right-handed alpha
Helix 9	AA9	A	402	411	Right-handed alpha
Helix 10	AB1	A	420	429	Right-handed alpha
Helix 11	AB2	A	476	485	Right-handed alpha
Helix 12	AB3	A	491	508	Right-handed alpha
Helix 13	AB4	A	539	550	Right-handed alpha
Helix 14	AB5	A	561	573	Right-handed alpha
Helix 15	AB6	A	581	585	Right-handed alpha
Helix 16	AB7	A	593	603	Right-handed alpha
Helix 17	AB8	A	611	625	Right-handed alpha
Helix 18	AB9	A	638	645	Right-handed alpha
Helix 19	AC1	A	655	662	Right-handed alpha
Helix 20	AC2	A	670	714	Right-handed alpha
Helix 21	AC3	A	718	729	Right-handed alpha
Helix 22	AC4	A	751	781	Right-handed alpha
Helix 23	AC5	A	792	807	Right-handed alpha
Helix 24	AC6	A	808	813	Right-handed alpha
Helix 25	AC7	A	824	845	Right-handed alpha
Helix 26	AC8	A	853	878	Right-handed alpha
Helix 27	AC9	A	896	919	Right-handed alpha
Helix 28	AD1	B	79	83	Right-handed 310
Helix 29	AD2	B	113	119	Right-handed alpha
Helix 30	AD3	B	122	134	Right-handed alpha
Helix 31	AD4	B	142	175	Right-handed alpha
Helix 32	AD5	B	285	315	Right-handed alpha
Helix 33	AD6	B	318	334	Right-handed alpha
Helix 34	AD7	B	337	356	Right-handed alpha
Helix 35	AD8	B	364	372	Right-handed alpha
Helix 36	AD9	B	402	411	Right-handed alpha
Helix 37	AE1	B	420	429	Right-handed alpha
Helix 38	AE2	B	476	485	Right-handed alpha
Helix 39	AE3	B	491	508	Right-handed alpha
Helix 40	AE4	B	539	550	Right-handed alpha
Helix 41	AE5	B	561	573	Right-handed alpha
Helix 42	AE6	B	581	585	Right-handed alpha
Helix 43	AE7	B	593	603	Right-handed alpha
Helix 44	AE8	B	611	625	Right-handed alpha
Helix 45	AE9	B	638	645	Right-handed alpha
Helix 46	AF1	B	655	662	Right-handed alpha
Helix 47	AF2	B	670	714	Right-handed alpha
Helix 48	AF3	B	718	729	Right-handed alpha
Helix 49	AF4	B	751	781	Right-handed alpha
Helix 50	AF5	B	792	807	Right-handed alpha
Helix 51	AF6	B	808	813	Right-handed alpha
Helix 52	AF7	B	824	845	Right-handed alpha
Helix 53	AF8	B	853	878	Right-handed alpha
Helix 54	AF9	B	896	919	Right-handed alpha
Helix 55	AG1	C	79	83	Right-handed 310
Helix 56	AG2	C	113	119	Right-handed alpha
Helix 57	AG3	C	122	134	Right-handed alpha
Helix 58	AG4	C	142	175	Right-handed alpha
Helix 59	AG5	C	285	315	Right-handed alpha
Helix 60	AG6	C	318	334	Right-handed alpha
Helix 61	AG7	C	337	356	Right-handed alpha
Helix 62	AG8	C	364	372	Right-handed alpha
Helix 63	AG9	C	402	411	Right-handed alpha
Helix 64	AH1	C	420	429	Right-handed alpha
Helix 65	AH2	C	476	485	Right-handed alpha
Helix 66	AH3	C	491	508	Right-handed alpha
Helix 67	AH4	C	539	550	Right-handed alpha
Helix 68	AH5	C	561	573	Right-handed alpha
Helix 69	AH6	C	581	585	Right-handed alpha
Helix 70	AH7	C	593	603	Right-handed alpha
Helix 71	AH8	C	611	625	Right-handed alpha
Helix 72	AH9	C	638	645	Right-handed alpha
Helix 73	AI1	C	655	662	Right-handed alpha
Helix 74	AI2	C	670	714	Right-handed alpha
Helix 75	AI3	C	718	729	Right-handed alpha
Helix 76	AI4	C	751	781	Right-handed alpha
Helix 77	AI5	C	792	807	Right-handed alpha
Helix 78	AI6	C	808	813	Right-handed alpha
Helix 79	AI7	C	824	845	Right-handed alpha
Helix 80	AI8	C	853	878	Right-handed alpha
Helix 81	AI9	C	896	919	Right-handed alpha
Helix 82	AJ1	D	79	83	Right-handed 310
Helix 83	AJ2	D	113	119	Right-handed alpha
Helix 84	AJ3	D	122	134	Right-handed alpha
Helix 85	AJ4	D	142	175	Right-handed alpha
Helix 86	AJ5	D	285	315	Right-handed alpha
Helix 87	AJ6	D	318	334	Right-handed alpha
Helix 88	AJ7	D	337	356	Right-handed alpha
Helix 89	AJ8	D	364	372	Right-handed alpha
Helix 90	AJ9	D	402	411	Right-handed alpha
Helix 91	AK1	D	420	429	Right-handed alpha
Helix 92	AK2	D	476	485	Right-handed alpha
Helix 93	AK3	D	491	508	Right-handed alpha
Helix 94	AK4	D	539	550	Right-handed alpha
Helix 95	AK5	D	561	573	Right-handed alpha
Helix 96	AK6	D	581	585	Right-handed alpha
Helix 97	AK7	D	593	603	Right-handed alpha
Helix 98	AK8	D	611	625	Right-handed alpha
Helix 99	AK9	D	638	645	Right-handed alpha
Helix 100	AL1	D	655	662	Right-handed alpha
Helix 101	AL2	D	670	714	Right-handed alpha
Helix 102	AL3	D	718	729	Right-handed alpha
Helix 103	AL4	D	751	781	Right-handed alpha
Helix 104	AL5	D	792	807	Right-handed alpha
Helix 105	AL6	D	808	813	Right-handed alpha
Helix 106	AL7	D	824	845	Right-handed alpha
Helix 107	AL8	D	853	878	Right-handed alpha
Helix 108	AL9	D	896	919	Right-handed alpha
Helix 109	AM1	E	79	83	Right-handed 310
Helix 110	AM2	E	113	119	Right-handed alpha
Helix 111	AM3	E	122	134	Right-handed alpha
Helix 112	AM4	E	142	175	Right-handed alpha
Helix 113	AM5	E	285	315	Right-handed alpha
Helix 114	AM6	E	318	334	Right-handed alpha
Helix 115	AM7	E	337	356	Right-handed alpha
Helix 116	AM8	E	364	372	Right-handed alpha
Helix 117	AM9	E	402	411	Right-handed alpha
Helix 118	AN1	E	420	429	Right-handed alpha
Helix 119	AN2	E	476	485	Right-handed alpha
Helix 120	AN3	E	491	508	Right-handed alpha
Helix 121	AN4	E	539	550	Right-handed alpha
Helix 122	AN5	E	561	573	Right-handed alpha
Helix 123	AN6	E	581	585	Right-handed alpha
Helix 124	AN7	E	593	603	Right-handed alpha
Helix 125	AN8	E	611	625	Right-handed alpha
Helix 126	AN9	E	638	645	Right-handed alpha
Helix 127	AO1	E	655	662	Right-handed alpha
Helix 128	AO2	E	670	714	Right-handed alpha
Helix 129	AO3	E	718	729	Right-handed alpha
Helix 130	AO4	E	751	781	Right-handed alpha
Helix 131	AO5	E	792	807	Right-handed alpha
Helix 132	AO6	E	808	813	Right-handed alpha
Helix 133	AO7	E	824	845	Right-handed alpha
Helix 134	AO8	E	853	878	Right-handed alpha
Helix 135	AO9	E	896	919	Right-handed alpha
Helix 136	AP1	F	79	83	Right-handed 310
Helix 137	AP2	F	113	119	Right-handed alpha
Helix 138	AP3	F	122	134	Right-handed alpha
Helix 139	AP4	F	142	175	Right-handed alpha
Helix 140	AP5	F	285	315	Right-handed alpha
Helix 141	AP6	F	318	334	Right-handed alpha
Helix 142	AP7	F	337	356	Right-handed alpha
Helix 143	AP8	F	364	372	Right-handed alpha
Helix 144	AP9	F	402	411	Right-handed alpha
Helix 145	AQ1	F	420	429	Right-handed alpha
Helix 146	AQ2	F	476	485	Right-handed alpha
Helix 147	AQ3	F	491	508	Right-handed alpha
Helix 148	AQ4	F	539	550	Right-handed alpha
Helix 149	AQ5	F	561	573	Right-handed alpha
Helix 150	AQ6	F	581	585	Right-handed alpha
Helix 151	AQ7	F	593	603	Right-handed alpha
Helix 152	AQ8	F	611	625	Right-handed alpha
Helix 153	AQ9	F	638	645	Right-handed alpha
Helix 154	AR1	F	655	662	Right-handed alpha
Helix 155	AR2	F	670	714	Right-handed alpha
Helix 156	AR3	F	718	729	Right-handed alpha
Helix 157	AR4	F	751	781	Right-handed alpha
Helix 158	AR5	F	792	807	Right-handed alpha
Helix 159	AR6	F	808	813	Right-handed alpha
Helix 160	AR7	F	824	845	Right-handed alpha
Helix 161	AR8	F	853	878	Right-handed alpha
Helix 162	AR9	F	896	919	Right-handed alpha

There are 24 sheets in PDB entry 7NY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	255	260	anti-parallel
Strand 3	A	214	216	anti-parallel
Strand 4	A	244	245	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	250	253	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	360	first strand
Strand 2	A	664	666	anti-parallel
Strand 3	A	647	650	parallel
Strand 4	A	629	633	parallel
Strand 5	A	374	378	parallel
Strand 6	A	553	558	parallel
Strand 7	A	606	608	parallel
Strand 8	A	578	580	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	525	533	anti-parallel
Strand 3	A	511	517	anti-parallel
Strand 4	A	469	475	anti-parallel
Strand 5	A	457	463	anti-parallel
Strand 6	A	445	449	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	255	260	anti-parallel
Strand 3	B	214	216	anti-parallel
Strand 4	B	244	245	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	250	253	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	360	first strand
Strand 2	B	664	666	anti-parallel
Strand 3	B	647	650	parallel
Strand 4	B	629	633	parallel
Strand 5	B	374	378	parallel
Strand 6	B	553	558	parallel
Strand 7	B	606	608	parallel
Strand 8	B	578	580	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	525	533	anti-parallel
Strand 3	B	511	517	anti-parallel
Strand 4	B	469	475	anti-parallel
Strand 5	B	457	463	anti-parallel
Strand 6	B	445	449	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	255	260	anti-parallel
Strand 3	C	214	216	anti-parallel
Strand 4	C	244	245	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	250	253	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	360	first strand
Strand 2	C	664	666	anti-parallel
Strand 3	C	647	650	parallel
Strand 4	C	629	633	parallel
Strand 5	C	374	378	parallel
Strand 6	C	553	558	parallel
Strand 7	C	606	608	parallel
Strand 8	C	578	580	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	390	first strand
Strand 2	C	525	533	anti-parallel
Strand 3	C	511	517	anti-parallel
Strand 4	C	469	475	anti-parallel
Strand 5	C	457	463	anti-parallel
Strand 6	C	445	449	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	205	first strand
Strand 2	D	255	260	anti-parallel
Strand 3	D	214	216	anti-parallel
Strand 4	D	244	245	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	250	253	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	360	first strand
Strand 2	D	664	666	anti-parallel
Strand 3	D	647	650	parallel
Strand 4	D	629	633	parallel
Strand 5	D	374	378	parallel
Strand 6	D	553	558	parallel
Strand 7	D	606	608	parallel
Strand 8	D	578	580	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	390	first strand
Strand 2	D	525	533	anti-parallel
Strand 3	D	511	517	anti-parallel
Strand 4	D	469	475	anti-parallel
Strand 5	D	457	463	anti-parallel
Strand 6	D	445	449	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	203	205	first strand
Strand 2	E	255	260	anti-parallel
Strand 3	E	214	216	anti-parallel
Strand 4	E	244	245	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	226	first strand
Strand 2	E	250	253	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	358	360	first strand
Strand 2	E	664	666	anti-parallel
Strand 3	E	647	650	parallel
Strand 4	E	629	633	parallel
Strand 5	E	374	378	parallel
Strand 6	E	553	558	parallel
Strand 7	E	606	608	parallel
Strand 8	E	578	580	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	389	390	first strand
Strand 2	E	525	533	anti-parallel
Strand 3	E	511	517	anti-parallel
Strand 4	E	469	475	anti-parallel
Strand 5	E	457	463	anti-parallel
Strand 6	E	445	449	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	205	first strand
Strand 2	F	255	260	anti-parallel
Strand 3	F	214	216	anti-parallel
Strand 4	F	244	245	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	226	first strand
Strand 2	F	250	253	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	358	360	first strand
Strand 2	F	664	666	anti-parallel
Strand 3	F	647	650	parallel
Strand 4	F	629	633	parallel
Strand 5	F	374	378	parallel
Strand 6	F	553	558	parallel
Strand 7	F	606	608	parallel
Strand 8	F	578	580	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	389	390	first strand
Strand 2	F	525	533	anti-parallel
Strand 3	F	511	517	anti-parallel
Strand 4	F	469	475	anti-parallel
Strand 5	F	457	463	anti-parallel
Strand 6	F	445	449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NY1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NY1