Analysis of interatomic Contacts of Structural Units in PDB entry:
7NY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7NY8 entry

There are 4 chains in PDB entry 7NY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0LYS 167
B
 HIS 0HIS 166
C
 ALA 2VAL 92
D
 SER 5HIS 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7NY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
65 75Right-handed alpha
Helix 3
AA3
A
86 92Right-handed alpha
Helix 4
AA4
A
92 105Right-handed alpha
Helix 5
AA5
A
126 138Right-handed alpha
Helix 6
AA6
A
151 167Right-handed alpha
Helix 7
AA7
B
15 26Right-handed alpha
Helix 8
AA8
B
65 75Right-handed alpha
Helix 9
AA9
B
86 92Right-handed alpha
Helix 10
AB1
B
92 105Right-handed alpha
Helix 11
AB2
B
126 138Right-handed alpha
Helix 12
AB3
B
151 166Right-handed alpha
Helix 13
AB4
C
7 24Right-handed alpha
Helix 14
AB5
D
6 24Right-handed alpha
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There are 4 sheets in PDB entry 7NY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 46first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
2 9parallel
Strand 4
A
77 83parallel
Strand 5
A
111 116parallel
Strand 6
A
141 143parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 46first strand
Strand 2
B
49 57anti-parallel
Strand 3
B
3 9parallel
Strand 4
B
77 83parallel
Strand 5
B
111 116parallel
Strand 6
B
141 143parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 91first strand
Strand 2
C
61 76anti-parallel
Strand 3
C
45 58anti-parallel
Strand 4
C
28 42anti-parallel
Strand 5
D
104 106parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 42first strand
Strand 2
D
45 58anti-parallel
Strand 3
D
61 76anti-parallel
Strand 4
D
79 91anti-parallel
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