Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NYH entry

There are 7 chains in PDB entry 7NYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 15	PRO 127
H	VAL 52	LEU 321
J	MET 1	ALA 164
K	MET 1	GLY 100
L	MET 1	LEU 612
M	MET 1	VAL 504
N	MET 1	PRO 483

There are100 helices in PDB entry 7NYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	38	Right-handed alpha
Helix 2	AA2	A	69	91	Right-handed alpha
Helix 3	AA3	A	91	121	Right-handed alpha
Helix 4	AA4	H	57	66	Right-handed alpha
Helix 5	AA5	H	80	96	Right-handed alpha
Helix 6	AA6	H	97	99	Right-handed 310
Helix 7	AA7	H	115	138	Right-handed alpha
Helix 8	AA8	H	139	172	Right-handed alpha
Helix 9	AA9	H	175	183	Right-handed alpha
Helix 10	AB1	H	192	206	Right-handed alpha
Helix 11	AB2	H	231	256	Right-handed alpha
Helix 12	AB3	H	266	289	Right-handed alpha
Helix 13	AB4	H	293	300	Right-handed alpha
Helix 14	AB5	H	305	321	Right-handed alpha
Helix 15	AB6	J	2	22	Right-handed alpha
Helix 16	AB7	J	24	47	Right-handed alpha
Helix 17	AB8	J	48	58	Right-handed alpha
Helix 18	AB9	J	62	74	Right-handed alpha
Helix 19	AC1	J	81	88	Right-handed alpha
Helix 20	AC2	J	89	113	Right-handed alpha
Helix 21	AC3	J	125	134	Right-handed alpha
Helix 22	AC4	J	137	159	Right-handed alpha
Helix 23	AC5	K	3	25	Right-handed alpha
Helix 24	AC6	K	27	53	Right-handed alpha
Helix 25	AC7	K	61	87	Right-handed alpha
Helix 26	AC8	L	5	21	Right-handed alpha
Helix 27	AC9	L	26	55	Right-handed alpha
Helix 28	AD1	L	82	107	Right-handed alpha
Helix 29	AD2	L	112	133	Right-handed alpha
Helix 30	AD3	L	135	155	Right-handed alpha
Helix 31	AD4	L	160	193	Right-handed alpha
Helix 32	AD5	L	196	202	Right-handed alpha
Helix 33	AD6	L	203	208	Right-handed alpha
Helix 34	AD7	L	212	230	Right-handed alpha
Helix 35	AD8	L	232	236	Right-handed 310
Helix 36	AD9	L	240	245	Right-handed 310
Helix 37	AE1	L	246	255	Right-handed alpha
Helix 38	AE2	L	261	269	Right-handed alpha
Helix 39	AE3	L	269	275	Right-handed alpha
Helix 40	AE4	L	276	295	Right-handed alpha
Helix 41	AE5	L	296	301	Right-handed alpha
Helix 42	AE6	L	303	325	Right-handed alpha
Helix 43	AE7	L	327	357	Right-handed alpha
Helix 44	AE8	L	372	387	Right-handed alpha
Helix 45	AE9	L	395	410	Right-handed alpha
Helix 46	AF1	L	411	437	Right-handed alpha
Helix 47	AF2	L	450	465	Right-handed alpha
Helix 48	AF3	L	465	470	Right-handed alpha
Helix 49	AF4	L	489	514	Right-handed alpha
Helix 50	AF5	L	516	523	Right-handed alpha
Helix 51	AF6	L	525	537	Right-handed alpha
Helix 52	AF7	L	540	548	Right-handed alpha
Helix 53	AF8	L	549	560	Right-handed alpha
Helix 54	AF9	L	563	569	Right-handed alpha
Helix 55	AG1	L	570	587	Right-handed alpha
Helix 56	AG2	L	590	611	Right-handed alpha
Helix 57	AG3	M	2	20	Right-handed alpha
Helix 58	AG4	M	26	50	Right-handed alpha
Helix 59	AG5	M	84	105	Right-handed alpha
Helix 60	AG6	M	113	132	Right-handed alpha
Helix 61	AG7	M	135	146	Right-handed alpha
Helix 62	AG8	M	148	159	Right-handed alpha
Helix 63	AG9	M	163	167	Right-handed 310
Helix 64	AH1	M	169	200	Right-handed alpha
Helix 65	AH2	M	206	211	Right-handed alpha
Helix 66	AH3	M	219	231	Right-handed alpha
Helix 67	AH4	M	242	251	Right-handed alpha
Helix 68	AH5	M	252	262	Right-handed alpha
Helix 69	AH6	M	264	274	Right-handed alpha
Helix 70	AH7	M	279	307	Right-handed alpha
Helix 71	AH8	M	311	331	Right-handed alpha
Helix 72	AH9	M	334	367	Right-handed alpha
Helix 73	AI1	M	383	396	Right-handed alpha
Helix 74	AI2	M	401	418	Right-handed alpha
Helix 75	AI3	M	418	426	Right-handed alpha
Helix 76	AI4	M	427	444	Right-handed alpha
Helix 77	AI5	M	447	456	Right-handed 310
Helix 78	AI6	M	461	481	Right-handed alpha
Helix 79	AI7	M	482	503	Right-handed alpha
Helix 80	AI8	N	4	11	Right-handed alpha
Helix 81	AI9	N	11	31	Right-handed alpha
Helix 82	AJ1	N	33	58	Right-handed alpha
Helix 83	AJ2	N	70	96	Right-handed alpha
Helix 84	AJ3	N	103	120	Right-handed alpha
Helix 85	AJ4	N	124	142	Right-handed alpha
Helix 86	AJ5	N	151	179	Right-handed alpha
Helix 87	AJ6	N	200	216	Right-handed alpha
Helix 88	AJ7	N	220	224	Right-handed 310
Helix 89	AJ8	N	225	234	Right-handed alpha
Helix 90	AJ9	N	235	244	Right-handed alpha
Helix 91	AK1	N	244	261	Right-handed alpha
Helix 92	AK2	N	262	265	Right-handed 310
Helix 93	AK3	N	266	286	Right-handed alpha
Helix 94	AK4	N	293	314	Right-handed alpha
Helix 95	AK5	N	321	348	Right-handed alpha
Helix 96	AK6	N	369	385	Right-handed alpha
Helix 97	AK7	N	389	405	Right-handed alpha
Helix 98	AK8	N	407	432	Right-handed alpha
Helix 99	AK9	N	448	470	Right-handed alpha
Helix 100	AL1	N	471	482	Right-handed alpha

There are 4 sheets in PDB entry 7NYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	60	70	first strand
Strand 2	L	73	81	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	65	66	first strand
Strand 2	M	82	83	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	70	72	first strand
Strand 2	M	77	78	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	61	62	first strand
Strand 2	N	68	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYH