Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NYP entry

There are 2 chains in PDB entry 7NYP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	LEU 732
B	VAL 4	LEU 732

There are 69 helices in PDB entry 7NYP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed 310
Helix 2	AA2	A	21	51	Right-handed alpha
Helix 3	AA3	A	65	72	Right-handed alpha
Helix 4	AA4	A	78	92	Right-handed alpha
Helix 5	AA5	A	98	122	Right-handed alpha
Helix 6	AA6	A	140	153	Right-handed alpha
Helix 7	AA7	A	168	182	Right-handed alpha
Helix 8	AA8	A	191	199	Right-handed alpha
Helix 9	AA9	A	204	207	Right-handed 310
Helix 10	AB1	A	214	217	Right-handed 310
Helix 11	AB2	A	218	231	Right-handed alpha
Helix 12	AB3	A	239	251	Right-handed alpha
Helix 13	AB4	A	262	275	Right-handed alpha
Helix 14	AB5	A	286	290	Right-handed 310
Helix 15	AB6	A	303	313	Right-handed alpha
Helix 16	AB7	A	328	332	Right-handed 310
Helix 17	AB8	A	360	364	Right-handed 310
Helix 18	AB9	A	375	379	Right-handed 310
Helix 19	AC1	A	401	416	Right-handed alpha
Helix 20	AC2	A	425	428	Right-handed 310
Helix 21	AC3	A	435	440	Right-handed alpha
Helix 22	AC4	A	443	459	Right-handed alpha
Helix 23	AC5	A	473	497	Right-handed alpha
Helix 24	AC6	A	510	515	Right-handed 310
Helix 25	AC7	A	535	546	Right-handed alpha
Helix 26	AC8	A	568	578	Right-handed alpha
Helix 27	AC9	A	630	639	Right-handed alpha
Helix 28	AD1	A	651	657	Right-handed 310
Helix 29	AD2	A	661	668	Right-handed 310
Helix 30	AD3	A	674	681	Right-handed alpha
Helix 31	AD4	A	681	692	Right-handed alpha
Helix 32	AD5	A	695	702	Right-handed 310
Helix 33	AD6	A	710	722	Right-handed alpha
Helix 34	AD7	A	723	728	Right-handed 310
Helix 35	AD8	B	6	12	Right-handed 310
Helix 36	AD9	B	21	51	Right-handed alpha
Helix 37	AE1	B	65	72	Right-handed alpha
Helix 38	AE2	B	78	92	Right-handed alpha
Helix 39	AE3	B	98	122	Right-handed alpha
Helix 40	AE4	B	140	147	Right-handed alpha
Helix 41	AE5	B	147	153	Right-handed alpha
Helix 42	AE6	B	168	182	Right-handed alpha
Helix 43	AE7	B	191	199	Right-handed alpha
Helix 44	AE8	B	204	207	Right-handed 310
Helix 45	AE9	B	214	217	Right-handed 310
Helix 46	AF1	B	218	232	Right-handed alpha
Helix 47	AF2	B	239	251	Right-handed alpha
Helix 48	AF3	B	262	275	Right-handed alpha
Helix 49	AF4	B	286	290	Right-handed 310
Helix 50	AF5	B	300	313	Right-handed alpha
Helix 51	AF6	B	328	332	Right-handed 310
Helix 52	AF7	B	360	364	Right-handed 310
Helix 53	AF8	B	375	379	Right-handed 310
Helix 54	AF9	B	401	416	Right-handed alpha
Helix 55	AG1	B	425	428	Right-handed 310
Helix 56	AG2	B	435	440	Right-handed alpha
Helix 57	AG3	B	443	459	Right-handed alpha
Helix 58	AG4	B	473	497	Right-handed alpha
Helix 59	AG5	B	510	515	Right-handed 310
Helix 60	AG6	B	535	546	Right-handed alpha
Helix 61	AG7	B	568	578	Right-handed alpha
Helix 62	AG8	B	630	639	Right-handed alpha
Helix 63	AG9	B	651	657	Right-handed 310
Helix 64	AH1	B	661	668	Right-handed 310
Helix 65	AH2	B	674	681	Right-handed alpha
Helix 66	AH3	B	681	692	Right-handed alpha
Helix 67	AH4	B	695	702	Right-handed 310
Helix 68	AH5	B	710	722	Right-handed alpha
Helix 69	AH6	B	723	728	Right-handed 310

There are 12 sheets in PDB entry 7NYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	213	first strand
Strand 2	A	185	189	parallel
Strand 3	A	159	164	parallel
Strand 4	A	253	258	parallel
Strand 5	A	279	281	parallel
Strand 6	A	295	297	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	341	346	parallel
Strand 3	A	430	434	anti-parallel
Strand 4	A	420	423	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	358	first strand
Strand 2	A	387	394	parallel
Strand 3	A	465	471	anti-parallel
Strand 4	A	369	372	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	505	509	anti-parallel
Strand 3	A	553	555	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	561	first strand
Strand 2	A	566	567	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	650	first strand
Strand 2	A	603	608	anti-parallel
Strand 3	A	613	618	anti-parallel
Strand 4	A	670	672	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	213	first strand
Strand 2	B	185	189	parallel
Strand 3	B	159	164	parallel
Strand 4	B	253	258	parallel
Strand 5	B	279	281	parallel
Strand 6	B	295	297	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	385	first strand
Strand 2	B	341	346	parallel
Strand 3	B	430	434	anti-parallel
Strand 4	B	420	423	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	358	first strand
Strand 2	B	387	394	parallel
Strand 3	B	465	471	anti-parallel
Strand 4	B	369	372	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	523	first strand
Strand 2	B	505	509	anti-parallel
Strand 3	B	553	555	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	561	first strand
Strand 2	B	566	567	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	647	650	first strand
Strand 2	B	603	608	anti-parallel
Strand 3	B	613	618	anti-parallel
Strand 4	B	670	672	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NYP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYP