Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NYQ entry

There are 2 chains in PDB entry 7NYQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 931	LEU 1203
B	ALA 931	HIS 1206

There are 6 helices in PDB entry 7NYQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	969	972	Right-handed 310
Helix 2	AA2	A	1192	1195	Right-handed 310
Helix 3	AA3	B	969	972	Right-handed 310
Helix 4	AA4	B	1017	1021	Right-handed 310
Helix 5	AA5	B	1146	1150	Right-handed 310
Helix 6	AA6	B	1193	1195	Right-handed 310

There are 10 sheets in PDB entry 7NYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1132	1135	first strand
Strand 2	A	1141	1145	anti-parallel
Strand 3	A	1152	1156	anti-parallel
Strand 4	A	1162	1167	anti-parallel
Strand 5	A	932	940	parallel
Strand 6	A	1196	1202	anti-parallel
Strand 7	A	1187	1191	anti-parallel
Strand 8	A	1177	1181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	957	958	first strand
Strand 2	A	964	968	anti-parallel
Strand 3	A	973	977	anti-parallel
Strand 4	A	983	987	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1002	1005	first strand
Strand 2	A	1012	1017	anti-parallel
Strand 3	A	1022	1027	anti-parallel
Strand 4	A	1033	1037	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1045	1050	first strand
Strand 2	A	1056	1060	anti-parallel
Strand 3	A	1065	1069	anti-parallel
Strand 4	A	1075	1080	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1092	1094	first strand
Strand 2	A	1097	1102	anti-parallel
Strand 3	A	1107	1112	anti-parallel
Strand 4	A	1117	1121	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1132	1135	first strand
Strand 2	B	1141	1145	anti-parallel
Strand 3	B	1152	1156	anti-parallel
Strand 4	B	1162	1167	anti-parallel
Strand 5	B	932	940	parallel
Strand 6	B	1196	1202	anti-parallel
Strand 7	B	1187	1191	anti-parallel
Strand 8	B	1176	1181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	958	first strand
Strand 2	B	964	968	anti-parallel
Strand 3	B	973	977	anti-parallel
Strand 4	B	983	987	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1002	1005	first strand
Strand 2	B	1012	1016	anti-parallel
Strand 3	B	1023	1027	anti-parallel
Strand 4	B	1033	1037	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1045	1050	first strand
Strand 2	B	1056	1060	anti-parallel
Strand 3	B	1065	1069	anti-parallel
Strand 4	B	1075	1080	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1092	1094	first strand
Strand 2	B	1097	1102	anti-parallel
Strand 3	B	1107	1112	anti-parallel
Strand 4	B	1117	1121	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NYQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYQ