Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NYR entry

There are 16 chains in PDB entry 7NYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 43	THR 101
B	PHE 103	ILE 220
D	PRO 9	ARG 596
E	ALA 11	THR 131
E	CYS 133	LYS 166
F	MET 1	THR 214
F	VAL 216	LEU 441
G	MET 1	GLN 907
I	HIS 23	PRO 180
K	MET 1	GLY 100
J	MET 1	ALA 164
A	ALA 15	PRO 127
H	VAL 52	LEU 321
M	MET 1	VAL 504
L	MET 1	LEU 612
N	MET 1	PRO 483

There are207 helices in PDB entry 7NYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	44	53	Right-handed alpha
Helix 2	AA2	B	64	76	Right-handed alpha
Helix 3	AA3	B	106	117	Right-handed alpha
Helix 4	AA4	B	127	132	Right-handed alpha
Helix 5	AA5	B	144	148	Right-handed 310
Helix 6	AA6	B	161	177	Right-handed alpha
Helix 7	AA7	B	199	204	Right-handed alpha
Helix 8	AA8	B	204	210	Right-handed alpha
Helix 9	AA9	D	19	30	Right-handed alpha
Helix 10	AB1	D	52	62	Right-handed alpha
Helix 11	AB2	D	129	141	Right-handed alpha
Helix 12	AB3	D	172	176	Right-handed 310
Helix 13	AB4	D	181	193	Right-handed alpha
Helix 14	AB5	D	251	257	Right-handed alpha
Helix 15	AB6	D	264	269	Right-handed alpha
Helix 16	AB7	D	276	292	Right-handed alpha
Helix 17	AB8	D	296	326	Right-handed alpha
Helix 18	AB9	D	333	350	Right-handed alpha
Helix 19	AC1	D	371	396	Right-handed alpha
Helix 20	AC2	D	398	404	Right-handed alpha
Helix 21	AC3	D	411	418	Right-handed alpha
Helix 22	AC4	D	422	427	Right-handed alpha
Helix 23	AC5	D	433	438	Right-handed alpha
Helix 24	AC6	D	442	446	Right-handed 310
Helix 25	AC7	D	458	483	Right-handed alpha
Helix 26	AC8	D	500	505	Right-handed alpha
Helix 27	AC9	D	507	520	Right-handed alpha
Helix 28	AD1	D	559	567	Right-handed alpha
Helix 29	AD2	D	567	572	Right-handed alpha
Helix 30	AD3	D	576	587	Right-handed alpha
Helix 31	AD4	D	590	596	Right-handed alpha
Helix 32	AD5	E	15	26	Right-handed alpha
Helix 33	AD6	E	27	29	Right-handed 310
Helix 34	AD7	E	31	34	Right-handed 310
Helix 35	AD8	E	35	48	Right-handed alpha
Helix 36	AD9	E	51	63	Right-handed alpha
Helix 37	AE1	E	65	76	Right-handed alpha
Helix 38	AE2	E	94	101	Right-handed alpha
Helix 39	AE3	E	101	114	Right-handed alpha
Helix 40	AE4	E	136	140	Right-handed 310
Helix 41	AE5	E	154	156	Right-handed 310
Helix 42	AE6	E	157	166	Right-handed alpha
Helix 43	AE7	F	25	32	Right-handed alpha
Helix 44	AE8	F	35	45	Right-handed alpha
Helix 45	AE9	F	46	58	Right-handed alpha
Helix 46	AF1	F	68	75	Right-handed alpha
Helix 47	AF2	F	99	108	Right-handed alpha
Helix 48	AF3	F	108	124	Right-handed alpha
Helix 49	AF4	F	136	151	Right-handed alpha
Helix 50	AF5	F	159	163	Right-handed 310
Helix 51	AF6	F	177	181	Right-handed 310
Helix 52	AF7	F	182	191	Right-handed alpha
Helix 53	AF8	F	208	212	Right-handed 310
Helix 54	AF9	F	219	232	Right-handed alpha
Helix 55	AG1	F	232	238	Right-handed alpha
Helix 56	AG2	F	269	276	Right-handed alpha
Helix 57	AG3	F	301	305	Right-handed 310
Helix 58	AG4	F	310	316	Right-handed alpha
Helix 59	AG5	F	334	349	Right-handed alpha
Helix 60	AG6	F	354	374	Right-handed alpha
Helix 61	AG7	F	379	391	Right-handed alpha
Helix 62	AG8	F	399	415	Right-handed alpha
Helix 63	AG9	F	415	420	Right-handed alpha
Helix 64	AH1	G	18	26	Right-handed alpha
Helix 65	AH2	G	81	97	Right-handed alpha
Helix 66	AH3	G	102	106	Right-handed 310
Helix 67	AH4	G	112	122	Right-handed alpha
Helix 68	AH5	G	148	151	Right-handed 310
Helix 69	AH6	G	155	162	Right-handed alpha
Helix 70	AH7	G	175	179	Right-handed 310
Helix 71	AH8	G	196	201	Right-handed alpha
Helix 72	AH9	G	209	214	Right-handed alpha
Helix 73	AI1	G	217	221	Right-handed 310
Helix 74	AI2	G	263	269	Right-handed alpha
Helix 75	AI3	G	270	275	Right-handed 310
Helix 76	AI4	G	294	309	Right-handed alpha
Helix 77	AI5	G	321	333	Right-handed alpha
Helix 78	AI6	G	342	359	Right-handed alpha
Helix 79	AI7	G	367	372	Right-handed 310
Helix 80	AI8	G	386	398	Right-handed alpha
Helix 81	AI9	G	398	408	Right-handed alpha
Helix 82	AJ1	G	414	423	Right-handed alpha
Helix 83	AJ2	G	450	466	Right-handed alpha
Helix 84	AJ3	G	476	492	Right-handed alpha
Helix 85	AJ4	G	503	505	Right-handed 310
Helix 86	AJ5	G	506	523	Right-handed alpha
Helix 87	AJ6	G	537	545	Right-handed alpha
Helix 88	AJ7	G	548	558	Right-handed alpha
Helix 89	AJ8	G	576	586	Right-handed alpha
Helix 90	AJ9	G	598	602	Right-handed 310
Helix 91	AK1	G	612	616	Right-handed 310
Helix 92	AK2	G	647	662	Right-handed alpha
Helix 93	AK3	G	668	680	Right-handed alpha
Helix 94	AK4	G	681	689	Right-handed 310
Helix 95	AK5	G	761	769	Right-handed 310
Helix 96	AK6	G	824	829	Right-handed 310
Helix 97	AK7	G	830	835	Right-handed alpha
Helix 98	AK8	G	843	851	Right-handed alpha
Helix 99	AK9	G	892	896	Right-handed 310
Helix 100	AL1	I	24	29	Right-handed alpha
Helix 101	AL2	I	64	70	Right-handed alpha
Helix 102	AL3	I	103	109	Right-handed alpha
Helix 103	AL4	I	126	129	Right-handed 310
Helix 104	AL5	I	133	138	Right-handed alpha
Helix 105	AL6	I	149	154	Right-handed alpha
Helix 106	AL7	K	3	25	Right-handed alpha
Helix 107	AL8	K	27	53	Right-handed alpha
Helix 108	AL9	K	58	87	Right-handed alpha
Helix 109	AM1	J	2	20	Right-handed alpha
Helix 110	AM2	J	24	47	Right-handed alpha
Helix 111	AM3	J	48	59	Right-handed alpha
Helix 112	AM4	J	62	75	Right-handed alpha
Helix 113	AM5	J	81	88	Right-handed alpha
Helix 114	AM6	J	89	112	Right-handed alpha
Helix 115	AM7	J	125	133	Right-handed alpha
Helix 116	AM8	J	137	159	Right-handed alpha
Helix 117	AM9	A	16	38	Right-handed alpha
Helix 118	AN1	A	69	89	Right-handed alpha
Helix 119	AN2	A	96	120	Right-handed alpha
Helix 120	AN3	H	56	68	Right-handed alpha
Helix 121	AN4	H	80	97	Right-handed alpha
Helix 122	AN5	H	98	101	Right-handed 310
Helix 123	AN6	H	115	126	Right-handed alpha
Helix 124	AN7	H	126	138	Right-handed alpha
Helix 125	AN8	H	139	157	Right-handed alpha
Helix 126	AN9	H	158	172	Right-handed alpha
Helix 127	AO1	H	175	183	Right-handed alpha
Helix 128	AO2	H	192	206	Right-handed alpha
Helix 129	AO3	H	231	256	Right-handed alpha
Helix 130	AO4	H	266	289	Right-handed alpha
Helix 131	AO5	H	293	300	Right-handed alpha
Helix 132	AO6	H	304	321	Right-handed alpha
Helix 133	AO7	M	2	20	Right-handed alpha
Helix 134	AO8	M	26	50	Right-handed alpha
Helix 135	AO9	M	84	105	Right-handed alpha
Helix 136	AP1	M	113	132	Right-handed alpha
Helix 137	AP2	M	135	146	Right-handed alpha
Helix 138	AP3	M	148	159	Right-handed alpha
Helix 139	AP4	M	163	167	Right-handed 310
Helix 140	AP5	M	169	200	Right-handed alpha
Helix 141	AP6	M	206	211	Right-handed alpha
Helix 142	AP7	M	219	231	Right-handed alpha
Helix 143	AP8	M	242	251	Right-handed alpha
Helix 144	AP9	M	252	262	Right-handed alpha
Helix 145	AQ1	M	264	274	Right-handed alpha
Helix 146	AQ2	M	279	307	Right-handed alpha
Helix 147	AQ3	M	311	331	Right-handed alpha
Helix 148	AQ4	M	334	367	Right-handed alpha
Helix 149	AQ5	M	383	396	Right-handed alpha
Helix 150	AQ6	M	401	418	Right-handed alpha
Helix 151	AQ7	M	418	426	Right-handed alpha
Helix 152	AQ8	M	427	444	Right-handed alpha
Helix 153	AQ9	M	447	456	Right-handed 310
Helix 154	AR1	M	461	481	Right-handed alpha
Helix 155	AR2	M	482	503	Right-handed alpha
Helix 156	AR3	L	5	21	Right-handed alpha
Helix 157	AR4	L	26	55	Right-handed alpha
Helix 158	AR5	L	82	107	Right-handed alpha
Helix 159	AR6	L	112	133	Right-handed alpha
Helix 160	AR7	L	135	155	Right-handed alpha
Helix 161	AR8	L	160	193	Right-handed alpha
Helix 162	AR9	L	196	202	Right-handed alpha
Helix 163	AS1	L	203	208	Right-handed alpha
Helix 164	AS2	L	212	230	Right-handed alpha
Helix 165	AS3	L	232	236	Right-handed 310
Helix 166	AS4	L	240	245	Right-handed 310
Helix 167	AS5	L	246	255	Right-handed alpha
Helix 168	AS6	L	261	269	Right-handed alpha
Helix 169	AS7	L	269	275	Right-handed alpha
Helix 170	AS8	L	276	295	Right-handed alpha
Helix 171	AS9	L	296	301	Right-handed alpha
Helix 172	AT1	L	303	325	Right-handed alpha
Helix 173	AT2	L	327	357	Right-handed alpha
Helix 174	AT3	L	372	387	Right-handed alpha
Helix 175	AT4	L	395	410	Right-handed alpha
Helix 176	AT5	L	411	437	Right-handed alpha
Helix 177	AT6	L	450	465	Right-handed alpha
Helix 178	AT7	L	465	470	Right-handed alpha
Helix 179	AT8	L	489	514	Right-handed alpha
Helix 180	AT9	L	516	523	Right-handed alpha
Helix 181	AU1	L	525	537	Right-handed alpha
Helix 182	AU2	L	540	548	Right-handed alpha
Helix 183	AU3	L	549	560	Right-handed alpha
Helix 184	AU4	L	563	569	Right-handed alpha
Helix 185	AU5	L	570	587	Right-handed alpha
Helix 186	AU6	L	590	611	Right-handed alpha
Helix 187	AU7	N	4	11	Right-handed alpha
Helix 188	AU8	N	11	31	Right-handed alpha
Helix 189	AU9	N	33	58	Right-handed alpha
Helix 190	AV1	N	70	96	Right-handed alpha
Helix 191	AV2	N	103	120	Right-handed alpha
Helix 192	AV3	N	124	142	Right-handed alpha
Helix 193	AV4	N	151	179	Right-handed alpha
Helix 194	AV5	N	200	216	Right-handed alpha
Helix 195	AV6	N	220	224	Right-handed 310
Helix 196	AV7	N	225	234	Right-handed alpha
Helix 197	AV8	N	235	244	Right-handed alpha
Helix 198	AV9	N	244	261	Right-handed alpha
Helix 199	AW1	N	262	265	Right-handed 310
Helix 200	AW2	N	266	286	Right-handed alpha
Helix 201	AW3	N	293	314	Right-handed alpha
Helix 202	AW4	N	321	348	Right-handed alpha
Helix 203	AW5	N	369	385	Right-handed alpha
Helix 204	AW6	N	389	405	Right-handed alpha
Helix 205	AW7	N	407	432	Right-handed alpha
Helix 206	AW8	N	448	470	Right-handed alpha
Helix 207	AW9	N	471	482	Right-handed alpha

There are 26 sheets in PDB entry 7NYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	95	99	parallel
Strand 3	B	122	126	parallel
Strand 4	B	153	155	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	105	113	parallel
Strand 3	D	92	100	anti-parallel
Strand 4	D	69	76	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	144	146	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	214	first strand
Strand 2	D	228	234	anti-parallel
Strand 3	D	237	244	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	359	360	first strand
Strand 2	D	363	364	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	534	first strand
Strand 2	D	539	546	anti-parallel
Strand 3	D	554	558	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	131	first strand
Strand 2	E	87	92	parallel
Strand 3	E	143	145	anti-parallel
Strand 4	E	148	150	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	173	first strand
Strand 2	F	127	132	parallel
Strand 3	F	86	91	parallel
Strand 4	F	214	218	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	260	265	first strand
Strand 2	F	247	253	anti-parallel
Strand 3	F	325	330	parallel
Strand 4	F	287	291	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	13	first strand
Strand 2	G	2	6	anti-parallel
Strand 3	G	76	78	parallel
Strand 4	G	49	53	anti-parallel
Strand 5	G	62	65	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	146	first strand
Strand 2	G	206	208	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	173	first strand
Strand 2	G	180	182	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	222	223	first strand
Strand 2	G	236	242	anti-parallel
Strand 3	G	226	227	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	222	223	first strand
Strand 2	G	236	242	anti-parallel
Strand 3	G	245	251	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	289	292	first strand
Strand 2	G	283	286	anti-parallel
Strand 3	G	606	609	anti-parallel
Strand 4	G	589	594	parallel
Strand 5	G	563	567	parallel
Strand 6	G	312	315	parallel
Strand 7	G	337	338	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	445	448	first strand
Strand 2	G	429	433	parallel
Strand 3	G	374	378	parallel
Strand 4	G	496	501	parallel
Strand 5	G	528	532	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	618	621	first strand
Strand 2	G	626	630	anti-parallel
Strand 3	G	783	784	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	702	703	first strand
Strand 2	G	734	735	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	881	885	first strand
Strand 2	G	810	815	parallel
Strand 3	G	899	900	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	840	842	first strand
Strand 2	G	865	873	parallel
Strand 3	G	857	862	anti-parallel
Strand 4	G	902	905	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	50	first strand
Strand 2	I	114	116	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	75	81	first strand
Strand 2	I	87	95	anti-parallel
Strand 3	I	131	132	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	65	66	first strand
Strand 2	M	82	83	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	70	72	first strand
Strand 2	M	77	78	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	60	70	first strand
Strand 2	L	73	81	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	61	62	first strand
Strand 2	N	68	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYR