Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NYZ entry

There are 14 chains in PDB entry 7NYZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	GLY 1468
B	ILE 2	GLY 1468
C	GLU 10	TYR 440
D	ILE 22	ILE 115
E	SER 2	VAL 213
F	PHE 9	ARG 206
G	THR 2	ASN 73
H	THR 2	ASN 73
I	MET 1	ASN 134
J	MET 1	GLN 135
K	C 59	A 80
L	T 1	G 22
M	A 1	T 30
N	A 3	T 32

There are161 helices in PDB entry 7NYZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	52	Right-handed alpha
Helix 2	AA2	A	77	81	Right-handed 310
Helix 3	AA3	A	131	136	Right-handed alpha
Helix 4	AA4	A	149	160	Right-handed alpha
Helix 5	AA5	A	170	181	Right-handed alpha
Helix 6	AA6	A	190	207	Right-handed alpha
Helix 7	AA7	A	210	216	Right-handed alpha
Helix 8	AA8	A	216	222	Right-handed alpha
Helix 9	AA9	A	225	401	Right-handed alpha
Helix 10	AB1	A	402	405	Right-handed 310
Helix 11	AB2	A	406	430	Right-handed alpha
Helix 12	AB3	A	439	468	Right-handed alpha
Helix 13	AB4	A	471	487	Right-handed alpha
Helix 14	AB5	A	490	513	Right-handed alpha
Helix 15	AB6	A	514	546	Right-handed alpha
Helix 16	AB7	A	551	554	Right-handed 310
Helix 17	AB8	A	555	618	Right-handed alpha
Helix 18	AB9	A	624	662	Right-handed alpha
Helix 19	AC1	A	671	681	Right-handed alpha
Helix 20	AC2	A	686	691	Right-handed alpha
Helix 21	AC3	A	696	706	Right-handed alpha
Helix 22	AC4	A	707	710	Right-handed 310
Helix 23	AC5	A	719	725	Right-handed alpha
Helix 24	AC6	A	780	782	Right-handed 310
Helix 25	AC7	A	783	825	Right-handed alpha
Helix 26	AC8	A	833	880	Right-handed alpha
Helix 27	AC9	A	882	888	Right-handed alpha
Helix 28	AD1	A	894	923	Right-handed alpha
Helix 29	AD2	A	924	931	Right-handed 310
Helix 30	AD3	A	932	966	Right-handed alpha
Helix 31	AD4	A	966	972	Right-handed alpha
Helix 32	AD5	A	972	980	Right-handed alpha
Helix 33	AD6	A	985	1046	Right-handed alpha
Helix 34	AD7	A	1050	1125	Right-handed alpha
Helix 35	AD8	A	1127	1132	Right-handed alpha
Helix 36	AD9	A	1135	1141	Right-handed 310
Helix 37	AE1	A	1142	1161	Right-handed alpha
Helix 38	AE2	A	1165	1175	Right-handed alpha
Helix 39	AE3	A	1179	1197	Right-handed alpha
Helix 40	AE4	A	1207	1210	Right-handed 310
Helix 41	AE5	A	1211	1260	Right-handed alpha
Helix 42	AE6	A	1261	1263	Right-handed 310
Helix 43	AE7	A	1280	1293	Right-handed alpha
Helix 44	AE8	A	1297	1301	Right-handed 310
Helix 45	AE9	A	1307	1319	Right-handed alpha
Helix 46	AF1	A	1329	1338	Right-handed alpha
Helix 47	AF2	A	1340	1342	Right-handed 310
Helix 48	AF3	A	1361	1365	Right-handed 310
Helix 49	AF4	A	1366	1391	Right-handed alpha
Helix 50	AF5	A	1407	1411	Right-handed 310
Helix 51	AF6	A	1412	1426	Right-handed alpha
Helix 52	AF7	B	39	52	Right-handed alpha
Helix 53	AF8	B	77	81	Right-handed 310
Helix 54	AF9	B	131	136	Right-handed alpha
Helix 55	AG1	B	149	160	Right-handed alpha
Helix 56	AG2	B	170	181	Right-handed alpha
Helix 57	AG3	B	190	207	Right-handed alpha
Helix 58	AG4	B	210	222	Right-handed alpha
Helix 59	AG5	B	226	409	Right-handed alpha
Helix 60	AG6	B	415	430	Right-handed alpha
Helix 61	AG7	B	439	487	Right-handed alpha
Helix 62	AG8	B	493	513	Right-handed alpha
Helix 63	AG9	B	514	546	Right-handed alpha
Helix 64	AH1	B	555	618	Right-handed alpha
Helix 65	AH2	B	624	663	Right-handed alpha
Helix 66	AH3	B	670	680	Right-handed alpha
Helix 67	AH4	B	686	690	Right-handed alpha
Helix 68	AH5	B	696	706	Right-handed alpha
Helix 69	AH6	B	707	709	Right-handed 310
Helix 70	AH7	B	719	724	Right-handed alpha
Helix 71	AH8	B	781	826	Right-handed alpha
Helix 72	AH9	B	827	829	Right-handed 310
Helix 73	AI1	B	833	880	Right-handed alpha
Helix 74	AI2	B	882	888	Right-handed alpha
Helix 75	AI3	B	894	923	Right-handed alpha
Helix 76	AI4	B	925	931	Right-handed 310
Helix 77	AI5	B	933	972	Right-handed alpha
Helix 78	AI6	B	982	1046	Right-handed alpha
Helix 79	AI7	B	1050	1124	Right-handed alpha
Helix 80	AI8	B	1135	1141	Right-handed 310
Helix 81	AI9	B	1142	1162	Right-handed alpha
Helix 82	AJ1	B	1165	1174	Right-handed alpha
Helix 83	AJ2	B	1180	1195	Right-handed alpha
Helix 84	AJ3	B	1200	1204	Right-handed 310
Helix 85	AJ4	B	1207	1260	Right-handed alpha
Helix 86	AJ5	B	1280	1293	Right-handed alpha
Helix 87	AJ6	B	1294	1296	Right-handed 310
Helix 88	AJ7	B	1297	1302	Right-handed alpha
Helix 89	AJ8	B	1307	1319	Right-handed alpha
Helix 90	AJ9	B	1329	1338	Right-handed alpha
Helix 91	AK1	B	1339	1342	Right-handed 310
Helix 92	AK2	B	1361	1365	Right-handed 310
Helix 93	AK3	B	1366	1389	Right-handed alpha
Helix 94	AK4	B	1407	1411	Right-handed 310
Helix 95	AK5	B	1412	1426	Right-handed alpha
Helix 96	AK6	C	11	19	Right-handed alpha
Helix 97	AK7	C	121	146	Right-handed alpha
Helix 98	AK8	C	148	157	Right-handed alpha
Helix 99	AK9	C	158	197	Right-handed alpha
Helix 100	AL1	C	200	241	Right-handed alpha
Helix 101	AL2	C	246	288	Right-handed alpha
Helix 102	AL3	C	289	293	Right-handed 310
Helix 103	AL4	C	295	307	Right-handed alpha
Helix 104	AL5	C	308	311	Right-handed 310
Helix 105	AL6	C	353	373	Right-handed alpha
Helix 106	AL7	C	377	387	Right-handed alpha
Helix 107	AL8	C	388	389	Right-handed 310
Helix 108	AL9	C	390	392	Right-handed 310
Helix 109	AM1	C	393	407	Right-handed alpha
Helix 110	AM2	C	411	416	Right-handed 310
Helix 111	AM3	D	25	42	Right-handed alpha
Helix 112	AM4	D	49	64	Right-handed alpha
Helix 113	AM5	D	69	84	Right-handed alpha
Helix 114	AM6	D	104	115	Right-handed alpha
Helix 115	AM7	E	5	9	Right-handed 310
Helix 116	AM8	E	11	19	Right-handed alpha
Helix 117	AM9	E	22	33	Right-handed alpha
Helix 118	AN1	E	40	50	Right-handed alpha
Helix 119	AN2	E	50	60	Right-handed alpha
Helix 120	AN3	E	89	105	Right-handed alpha
Helix 121	AN4	E	106	112	Right-handed 310
Helix 122	AN5	E	117	128	Right-handed alpha
Helix 123	AN6	E	129	138	Right-handed alpha
Helix 124	AN7	E	144	165	Right-handed alpha
Helix 125	AN8	E	182	189	Right-handed 310
Helix 126	AN9	E	196	208	Right-handed alpha
Helix 127	AO1	F	11	20	Right-handed alpha
Helix 128	AO2	F	22	32	Right-handed alpha
Helix 129	AO3	F	40	60	Right-handed alpha
Helix 130	AO4	F	89	103	Right-handed alpha
Helix 131	AO5	F	106	111	Right-handed alpha
Helix 132	AO6	F	117	128	Right-handed alpha
Helix 133	AO7	F	129	138	Right-handed alpha
Helix 134	AO8	F	144	166	Right-handed alpha
Helix 135	AO9	F	182	187	Right-handed 310
Helix 136	AP1	F	196	206	Right-handed alpha
Helix 137	AP2	G	3	16	Right-handed alpha
Helix 138	AP3	G	27	32	Right-handed alpha
Helix 139	AP4	G	35	50	Right-handed alpha
Helix 140	AP5	G	55	60	Right-handed alpha
Helix 141	AP6	G	66	71	Right-handed alpha
Helix 142	AP7	H	3	16	Right-handed alpha
Helix 143	AP8	H	35	50	Right-handed alpha
Helix 144	AP9	H	55	61	Right-handed alpha
Helix 145	AQ1	H	64	73	Right-handed alpha
Helix 146	AQ2	I	6	24	Right-handed alpha
Helix 147	AQ3	I	33	47	Right-handed alpha
Helix 148	AQ4	I	50	62	Right-handed alpha
Helix 149	AQ5	I	63	65	Right-handed 310
Helix 150	AQ6	I	66	84	Right-handed alpha
Helix 151	AQ7	I	98	112	Right-handed alpha
Helix 152	AQ8	I	114	134	Right-handed alpha
Helix 153	AQ9	J	6	24	Right-handed alpha
Helix 154	AR1	J	33	47	Right-handed alpha
Helix 155	AR2	J	48	50	Right-handed 310
Helix 156	AR3	J	51	62	Right-handed alpha
Helix 157	AR4	J	63	65	Right-handed 310
Helix 158	AR5	J	66	84	Right-handed alpha
Helix 159	AR6	J	85	89	Right-handed 310
Helix 160	AR7	J	98	112	Right-handed alpha
Helix 161	AR8	J	114	135	Right-handed alpha

There are 18 sheets in PDB entry 7NYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	24	first strand
Strand 2	A	6	15	anti-parallel
Strand 3	A	85	93	anti-parallel
Strand 4	A	99	109	anti-parallel
Strand 5	A	115	124	anti-parallel
Strand 6	A	164	167	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1402	1405	first strand
Strand 2	A	1429	1434	parallel
Strand 3	A	29	33	parallel
Strand 4	A	1444	1453	parallel
Strand 5	A	1456	1465	anti-parallel
Strand 6	C	430	433	anti-parallel
Strand 7	C	422	426	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	146	147	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	685	first strand
Strand 2	A	712	713	anti-parallel
Strand 3	A	733	737	parallel
Strand 4	B	766	771	anti-parallel
Strand 5	B	757	763	anti-parallel
Strand 6	B	751	754	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	754	first strand
Strand 2	A	757	763	anti-parallel
Strand 3	A	766	771	anti-parallel
Strand 4	B	733	737	anti-parallel
Strand 5	B	712	713	parallel
Strand 6	B	684	685	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1270	1279	first strand
Strand 2	A	1344	1352	anti-parallel
Strand 3	A	1357	1359	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	6	13	anti-parallel
Strand 3	B	85	93	anti-parallel
Strand 4	B	99	108	anti-parallel
Strand 5	B	116	124	anti-parallel
Strand 6	B	164	167	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1402	1405	first strand
Strand 2	B	1429	1433	parallel
Strand 3	B	29	33	parallel
Strand 4	B	1444	1453	parallel
Strand 5	B	1456	1465	anti-parallel
Strand 6	C	348	350	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	138	first strand
Strand 2	B	146	147	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1270	1279	first strand
Strand 2	B	1344	1352	anti-parallel
Strand 3	B	1358	1359	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	87	first strand
Strand 2	C	313	318	anti-parallel
Strand 3	E	210	212	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	325	first strand
Strand 2	F	85	87	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	99	103	anti-parallel
Strand 3	D	87	91	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	67	first strand
Strand 2	E	73	77	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	177	180	anti-parallel
Strand 3	E	168	170	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	73	77	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	116	first strand
Strand 2	F	177	180	anti-parallel
Strand 3	F	168	170	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	97	first strand
Strand 2	J	91	97	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NYZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NYZ