Analysis of interatomic Contacts of Structural Units in PDB entry:
7NZM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7NZM entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 7NZM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	CYS 5	LEU 50
E	ARG 52	ARG 182
B	LEU 7	ALA 299
A	THR 6	PHE 375
D	ILE 3	LEU 259
C	GLU 560	ARG 618

There are 54 helices in PDB entry 7NZM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	55	66	Right-handed 310
Helix 2	AA2	E	90	118	Right-handed alpha
Helix 3	AA3	E	122	133	Right-handed alpha
Helix 4	AA4	E	133	142	Right-handed alpha
Helix 5	AA5	E	145	155	Right-handed alpha
Helix 6	AA6	E	156	157	Right-handed 310
Helix 7	AA7	E	158	163	Right-handed 310
Helix 8	AA8	E	168	181	Right-handed alpha
Helix 9	AA9	B	8	19	Right-handed alpha
Helix 10	AB1	B	31	41	Right-handed alpha
Helix 11	AB2	B	42	49	Right-handed alpha
Helix 12	AB3	B	68	80	Right-handed alpha
Helix 13	AB4	B	99	114	Right-handed alpha
Helix 14	AB5	B	127	132	Right-handed alpha
Helix 15	AB6	B	135	144	Right-handed alpha
Helix 16	AB7	B	145	156	Right-handed alpha
Helix 17	AB8	B	157	159	Right-handed 310
Helix 18	AB9	B	183	188	Right-handed alpha
Helix 19	AC1	B	199	207	Right-handed alpha
Helix 20	AC2	B	228	239	Right-handed alpha
Helix 21	AC3	B	271	275	Right-handed 310
Helix 22	AC4	A	55	61	Right-handed alpha
Helix 23	AC5	A	78	92	Right-handed alpha
Helix 24	AC6	A	97	101	Right-handed 310
Helix 25	AC7	A	112	126	Right-handed alpha
Helix 26	AC8	A	137	145	Right-handed alpha
Helix 27	AC9	A	172	175	Right-handed 310
Helix 28	AD1	A	181	197	Right-handed alpha
Helix 29	AD2	A	202	207	Right-handed alpha
Helix 30	AD3	A	207	217	Right-handed alpha
Helix 31	AD4	A	222	233	Right-handed alpha
Helix 32	AD5	A	252	263	Right-handed alpha
Helix 33	AD6	A	264	268	Right-handed 310
Helix 34	AD7	A	273	285	Right-handed alpha
Helix 35	AD8	A	289	295	Right-handed alpha
Helix 36	AD9	A	301	305	Right-handed 310
Helix 37	AE1	A	308	321	Right-handed alpha
Helix 38	AE2	A	337	349	Right-handed alpha
Helix 39	AE3	A	350	355	Right-handed 310
Helix 40	AE4	A	359	366	Right-handed alpha
Helix 41	AE5	A	368	374	Right-handed alpha
Helix 42	AE6	D	12	18	Right-handed alpha
Helix 43	AE7	D	18	31	Right-handed alpha
Helix 44	AE8	D	45	56	Right-handed alpha
Helix 45	AE9	D	136	138	Right-handed 310
Helix 46	AF1	D	139	159	Right-handed alpha
Helix 47	AF2	D	177	183	Right-handed 310
Helix 48	AF3	D	184	189	Right-handed alpha
Helix 49	AF4	D	218	225	Right-handed alpha
Helix 50	AF5	D	234	240	Right-handed alpha
Helix 51	AF6	D	242	250	Right-handed alpha
Helix 52	AF7	C	582	604	Right-handed alpha
Helix 53	AF8	C	605	607	Right-handed 310
Helix 54	AF9	C	608	618	Right-handed alpha

There are 13 sheets in PDB entry 7NZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	27	first strand
Strand 2	E	30	35	anti-parallel
Strand 3	E	42	45	anti-parallel
Strand 4	E	81	85	parallel
Strand 5	E	69	76	anti-parallel
Strand 6	E	18	27	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	86	89	parallel
Strand 3	B	59	62	parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	291	296	anti-parallel
Strand 6	C	562	565	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	169	172	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	225	227	parallel
Strand 3	B	216	218	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	246	first strand
Strand 2	B	263	265	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	11	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	D	64	67	parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	34	40	anti-parallel
Strand 5	D	4	11	parallel
Strand 6	D	255	256	anti-parallel
Strand 7	D	231	232	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	247	250	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	96	first strand
Strand 2	D	114	119	anti-parallel
Strand 3	D	127	134	anti-parallel
Strand 4	D	163	168	parallel
Strand 5	D	213	217	anti-parallel
Strand 6	D	193	194	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7NZM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7NZM