Analysis of interatomic Contacts of Structural Units in PDB entry:
7O0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7O0D entry

There is 1 chain in PDB entry 7O0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4LEU 732
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7O0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 12Right-handed 310
Helix 2
AA2
A
21 51Right-handed alpha
Helix 3
AA3
A
65 72Right-handed alpha
Helix 4
AA4
A
78 93Right-handed alpha
Helix 5
AA5
A
98 122Right-handed alpha
Helix 6
AA6
A
140 153Right-handed alpha
Helix 7
AA7
A
168 182Right-handed alpha
Helix 8
AA8
A
191 199Right-handed alpha
Helix 9
AA9
A
204 207Right-handed 310
Helix 10
AB1
A
214 217Right-handed 310
Helix 11
AB2
A
218 232Right-handed alpha
Helix 12
AB3
A
239 251Right-handed alpha
Helix 13
AB4
A
262 275Right-handed alpha
Helix 14
AB5
A
286 290Right-handed 310
Helix 15
AB6
A
300 313Right-handed alpha
Helix 16
AB7
A
328 334Right-handed 310
Helix 17
AB8
A
375 379Right-handed 310
Helix 18
AB9
A
399 401Right-handed 310
Helix 19
AC1
A
402 415Right-handed alpha
Helix 20
AC2
A
425 429Right-handed 310
Helix 21
AC3
A
434 440Right-handed alpha
Helix 22
AC4
A
443 459Right-handed alpha
Helix 23
AC5
A
473 497Right-handed alpha
Helix 24
AC6
A
510 515Right-handed 310
Helix 25
AC7
A
535 546Right-handed alpha
Helix 26
AC8
A
568 578Right-handed alpha
Helix 27
AC9
A
630 639Right-handed alpha
Helix 28
AD1
A
651 657Right-handed 310
Helix 29
AD2
A
661 668Right-handed 310
Helix 30
AD3
A
674 681Right-handed alpha
Helix 31
AD4
A
681 692Right-handed alpha
Helix 32
AD5
A
695 702Right-handed 310
Helix 33
AD6
A
710 722Right-handed alpha
Helix 34
AD7
A
723 728Right-handed 310
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There are 7 sheets in PDB entry 7O0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 213first strand
Strand 2
A
185 189parallel
Strand 3
A
159 164parallel
Strand 4
A
253 258parallel
Strand 5
A
279 281parallel
Strand 6
A
295 297parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
387 394parallel
Strand 3
A
356 358parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
387 394parallel
Strand 3
A
465 471anti-parallel
Strand 4
A
369 371parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
A
430 433anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 523first strand
Strand 2
A
505 509anti-parallel
Strand 3
A
553 555anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 561first strand
Strand 2
A
566 567anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 650first strand
Strand 2
A
603 608anti-parallel
Strand 3
A
613 618anti-parallel
Strand 4
A
670 672parallel
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