Analysis of interatomic Contacts of Structural Units in PDB entry:
7O0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7O0T entry

There are 4 chains in PDB entry 7O0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TRP 354
B	MET 1	TRP 354
C	MET 1	TRP 354
D	MET 1	TRP 354

There are 66 helices in PDB entry 7O0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	50	Right-handed alpha
Helix 2	AA2	A	62	66	Right-handed 310
Helix 3	AA3	A	76	78	Right-handed 310
Helix 4	AA4	A	79	93	Right-handed alpha
Helix 5	AA5	A	104	108	Right-handed 310
Helix 6	AA6	A	112	116	Right-handed 310
Helix 7	AA7	A	121	125	Right-handed 310
Helix 8	AA8	A	148	170	Right-handed alpha
Helix 9	AA9	A	182	189	Right-handed alpha
Helix 10	AB1	A	202	207	Right-handed alpha
Helix 11	AB2	A	207	221	Right-handed alpha
Helix 12	AB3	A	242	256	Right-handed alpha
Helix 13	AB4	A	281	292	Right-handed alpha
Helix 14	AB5	A	304	314	Right-handed alpha
Helix 15	AB6	A	323	329	Right-handed alpha
Helix 16	AB7	A	331	341	Right-handed alpha
Helix 17	AB8	A	347	354	Right-handed 310
Helix 18	AB9	B	36	49	Right-handed alpha
Helix 19	AC1	B	62	66	Right-handed 310
Helix 20	AC2	B	76	78	Right-handed 310
Helix 21	AC3	B	79	92	Right-handed alpha
Helix 22	AC4	B	104	108	Right-handed 310
Helix 23	AC5	B	112	116	Right-handed 310
Helix 24	AC6	B	148	170	Right-handed alpha
Helix 25	AC7	B	182	189	Right-handed alpha
Helix 26	AC8	B	202	221	Right-handed alpha
Helix 27	AC9	B	242	256	Right-handed alpha
Helix 28	AD1	B	281	293	Right-handed alpha
Helix 29	AD2	B	304	314	Right-handed alpha
Helix 30	AD3	B	323	329	Right-handed alpha
Helix 31	AD4	B	331	341	Right-handed alpha
Helix 32	AD5	B	347	354	Right-handed 310
Helix 33	AD6	C	36	49	Right-handed alpha
Helix 34	AD7	C	62	66	Right-handed 310
Helix 35	AD8	C	76	78	Right-handed 310
Helix 36	AD9	C	79	93	Right-handed alpha
Helix 37	AE1	C	104	108	Right-handed 310
Helix 38	AE2	C	112	116	Right-handed 310
Helix 39	AE3	C	121	125	Right-handed 310
Helix 40	AE4	C	148	170	Right-handed alpha
Helix 41	AE5	C	182	189	Right-handed alpha
Helix 42	AE6	C	202	207	Right-handed alpha
Helix 43	AE7	C	207	221	Right-handed alpha
Helix 44	AE8	C	242	256	Right-handed alpha
Helix 45	AE9	C	281	292	Right-handed alpha
Helix 46	AF1	C	304	314	Right-handed alpha
Helix 47	AF2	C	323	329	Right-handed alpha
Helix 48	AF3	C	331	341	Right-handed alpha
Helix 49	AF4	C	347	354	Right-handed 310
Helix 50	AF5	D	36	49	Right-handed alpha
Helix 51	AF6	D	62	66	Right-handed 310
Helix 52	AF7	D	76	78	Right-handed 310
Helix 53	AF8	D	79	93	Right-handed alpha
Helix 54	AF9	D	104	108	Right-handed 310
Helix 55	AG1	D	112	116	Right-handed 310
Helix 56	AG2	D	121	125	Right-handed 310
Helix 57	AG3	D	148	170	Right-handed alpha
Helix 58	AG4	D	182	189	Right-handed alpha
Helix 59	AG5	D	202	207	Right-handed alpha
Helix 60	AG6	D	207	221	Right-handed alpha
Helix 61	AG7	D	242	256	Right-handed alpha
Helix 62	AG8	D	281	293	Right-handed alpha
Helix 63	AG9	D	304	314	Right-handed alpha
Helix 64	AH1	D	323	329	Right-handed alpha
Helix 65	AH2	D	331	341	Right-handed alpha
Helix 66	AH3	D	347	354	Right-handed 310

There are 12 sheets in PDB entry 7O0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	14	16	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	53	60	parallel
Strand 3	A	96	102	parallel
Strand 4	A	173	178	parallel
Strand 5	A	227	232	parallel
Strand 6	A	260	264	parallel
Strand 7	A	295	298	parallel
Strand 8	A	319	322	parallel
Strand 9	A	20	22	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	145	146	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	14	16	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	53	60	parallel
Strand 3	B	96	102	parallel
Strand 4	B	173	178	parallel
Strand 5	B	227	232	parallel
Strand 6	B	260	264	parallel
Strand 7	B	295	298	parallel
Strand 8	B	319	322	parallel
Strand 9	B	20	22	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	145	146	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	14	16	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	22	first strand
Strand 2	C	53	60	parallel
Strand 3	C	96	102	parallel
Strand 4	C	173	178	parallel
Strand 5	C	227	232	parallel
Strand 6	C	260	264	parallel
Strand 7	C	295	299	parallel
Strand 8	C	319	322	parallel
Strand 9	C	20	22	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	145	146	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	14	16	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	73	first strand
Strand 2	D	53	60	parallel
Strand 3	D	96	102	parallel
Strand 4	D	173	178	parallel
Strand 5	D	227	232	parallel
Strand 6	D	260	264	parallel
Strand 7	D	295	298	parallel
Strand 8	D	319	322	parallel
Strand 9	D	20	22	parallel
Strand 10	D	53	60	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	144	146	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7O0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
7O0T